SMTL ID : 8vot.1

The crystal structure of wild-type CYP199A4 bound to 4-(hydroxymethyl)benzoic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

monomer

Ligands

1 x E5X: 4-(hydroxymethyl)benzoic acid(Non-covalent)

E5X.1: 11 residues within 4Å: Chain A: R.93, S.96, I.98, L.99, F.183, F.186, S.245, S.248, A.249, F.299 Ligands: HEM.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.99, A:L.99, A:L.99, A:F.186, A:A.249 Hydrogen bonds: A:S.96, A:S.248, A:S.248 Salt bridges: A:R.93

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.2: 27 residues within 4Å: Chain A: I.98, L.99, H.106, R.110, L.113, L.117, F.161, L.246, A.249, G.250, T.253, T.254, V.296, F.299, R.301, L.324, G.351, F.352, G.353, V.356, H.357, C.359, V.360, G.361, V.364, A.365 Ligands: E5X.1 21 PLIP interactions: 20 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:I.98, A:L.99, A:L.113, A:L.117, A:F.161, A:L.246, A:A.249, A:T.254, A:F.299, A:L.324, A:F.352, A:V.360, A:V.364 Water bridges: A:H.357 Salt bridges: A:H.106, A:R.110, A:R.301, A:H.357, A:H.357 Metal complexes: A:C.359, H2O.4

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: Y.178, N.208, R.244 Ligand excluded by PLIP

2 x MG: MAGNESIUM ION(Non-functional Binders)

MG.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Podgorski, M.N. et al., Investigating the Correlation between Product Release and Solvation in Cytochrome P450 Enzymes. Acs Catalysis (2025)

Release Date

2025-08-13

Peptides

Cytochrome P450: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450

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