SMTL ID : 8vwh.1 (1 other biounit)

Structure of the baculovirus major nucleocapsid protein VP39 (localised reconstruction)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-octamer

Ligands

7 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.18, C.36, C.49, H.52 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.18, A:C.36, A:C.49, A:H.52 ZN.2: 4 residues within 4Å: Chain B: C.18, C.36, C.49, H.52 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.18, B:C.36, B:C.49, B:H.52 ZN.3: 5 residues within 4Å: Chain C: C.18, C.36, S.37, C.49, H.52 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.18, C:C.36, C:C.49, C:H.52 ZN.4: 4 residues within 4Å: Chain D: C.18, C.36, C.49, H.52 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.18, D:C.36, D:C.49, D:H.52 ZN.5: 4 residues within 4Å: Chain E: C.18, C.36, C.49, H.52 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.18, E:C.36, E:C.49, E:H.52 ZN.6: 4 residues within 4Å: Chain F: C.18, C.36, C.49, H.52 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.18, F:C.36, F:C.49, F:H.52 ZN.7: 4 residues within 4Å: Chain G: C.18, C.36, C.49, H.52 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.18, G:C.36, G:C.49, G:H.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Johnstone, B.A. et al., The nucleocapsid architecture and structural atlas of the prototype baculovirus define the hallmarks of a new viral realm. Sci Adv (2024)

Release Date

2024-11-06

Peptides

Major capsid protein: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
E

D
G

E
I

F
K

G
M

H
O

Major capsid protein

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