SMTL ID : 9h2a.1

AcMNPV complete basal cap

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-2-2-8-6-2-mer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain G: C.18, C.36, S.37, C.49, H.52 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.18, G:C.36, G:C.49, G:H.52 ZN.2: 4 residues within 4Å: Chain H: C.18, C.36, C.49, H.52 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.18, H:C.36, H:C.49, H:H.52 ZN.3: 6 residues within 4Å: Chain M: C.18, P.35, C.36, S.37, C.49, H.52 4 PLIP interactions: 4 interactions with chain M Metal complexes: M:C.18, M:C.36, M:C.49, M:H.52 ZN.4: 4 residues within 4Å: Chain N: C.18, C.36, C.49, H.52 4 PLIP interactions: 4 interactions with chain N Metal complexes: N:C.18, N:C.36, N:C.49, N:H.52 ZN.5: 5 residues within 4Å: Chain Y: C.18, C.36, S.37, C.49, H.52 4 PLIP interactions: 4 interactions with chain Y Metal complexes: Y:C.18, Y:C.36, Y:C.49, Y:H.52 ZN.6: 4 residues within 4Å: Chain Z: C.18, C.36, C.49, H.52 4 PLIP interactions: 4 interactions with chain Z Metal complexes: Z:C.18, Z:C.36, Z:C.49, Z:H.52 ZN.7: 6 residues within 4Å: Chain 4: C.18, P.35, C.36, S.37, C.49, H.52 4 PLIP interactions: 4 interactions with chain 4 Metal complexes: 4:C.18, 4:C.36, 4:C.49, 4:H.52 ZN.8: 4 residues within 4Å: Chain 5: C.18, C.36, C.49, H.52 4 PLIP interactions: 4 interactions with chain 5 Metal complexes: 5:C.18, 5:C.36, 5:C.49, 5:H.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Effantin, G. et al., Structure of AcMNPV nucleocapsid reveals DNA portal organization and packaging apparatus of circular dsDNA baculovirus. Nat Commun (2025)

Release Date

2025-06-04

Peptides

Occlusion-derived virus envelope protein E27: ABOPQR
Protein C42: CDSTUV
Uncharacterized 38.0 kDa protein in P143-LEF5 intergenic region: EW
Protein AC142: FX
Major capsid protein: GHMNYZ45
Capsid-associated protein VP80: IJK012
Protein AC109: L3

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

O
O

P
P

Q
Q

R
R

C
C

D
D

S
S

T
T

U
U

V
V

E
E

W
W

F
F

X
X

G
G

H
H

M
M

N
N

Y
Y

Z
Z

4
e

5
f

I
I

J
J

K
K

0
a

1
b

2
c

L
L

3
d

Occlusion-derived virus envelope protein E27

Protein C42

Uncharacterized 38.0 kDa protein in P143-LEF5 intergenic region

Protein AC142

Major capsid protein

Capsid-associated protein VP80

Protein AC109

Related Entries With Identical Sequence