SMTL ID : 8vwi.1

The base complex of the AcMNPV baculovirus nucleocapsid (Class 1, localised reconstruction)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-12-6-6-6-2-2-2-mer

Ligands

12 x ZN: ZINC ION(Non-covalent)

ZN.1: 8 residues within 4Å: Chain A: R.17, C.18, F.20, C.36, S.37, A.40, C.49, H.52 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.18, A:C.36, A:C.49 ZN.2: 6 residues within 4Å: Chain B: C.18, F.20, A.21, C.36, C.49, H.52 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:C.18, B:C.36, B:C.49, B:H.52, B:H.52 ZN.3: 5 residues within 4Å: Chain C: C.18, F.20, C.36, C.49, H.52 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:C.18, C:C.36, C:C.49, C:H.52, C:H.52 ZN.4: 7 residues within 4Å: Chain D: C.18, F.20, A.21, S.34, C.36, C.49, H.52 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.18, D:C.36, D:C.49, D:H.52 ZN.5: 6 residues within 4Å: Chain E: C.18, F.20, A.21, C.36, C.49, H.52 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.18, E:C.36, E:C.49, E:H.52 ZN.6: 8 residues within 4Å: Chain F: C.18, F.20, A.21, C.36, S.37, C.49, N.51, H.52 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.18, F:C.36, F:C.49, F:H.52 ZN.7: 7 residues within 4Å: Chain U: C.18, F.20, C.36, S.37, A.40, C.49, H.52 3 PLIP interactions: 3 interactions with chain U Metal complexes: U:C.18, U:C.36, U:C.49 ZN.8: 5 residues within 4Å: Chain V: C.18, F.20, C.36, C.49, H.52 4 PLIP interactions: 4 interactions with chain V Metal complexes: V:C.18, V:C.36, V:C.49, V:H.52 ZN.9: 6 residues within 4Å: Chain W: C.18, F.20, A.21, C.36, C.49, H.52 4 PLIP interactions: 4 interactions with chain W Metal complexes: W:C.18, W:C.36, W:C.49, W:H.52 ZN.10: 8 residues within 4Å: Chain X: N.16, C.18, F.20, A.21, C.36, S.37, C.49, H.52 4 PLIP interactions: 4 interactions with chain X Metal complexes: X:C.18, X:C.36, X:C.49, X:H.52 ZN.11: 6 residues within 4Å: Chain Y: C.18, F.20, A.21, C.36, C.49, H.52 4 PLIP interactions: 4 interactions with chain Y Metal complexes: Y:C.18, Y:C.36, Y:C.49, Y:H.52 ZN.12: 5 residues within 4Å: Chain Z: C.18, F.20, C.36, C.49, H.52 5 PLIP interactions: 5 interactions with chain Z Metal complexes: Z:C.18, Z:C.36, Z:C.49, Z:H.52, Z:H.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Johnstone, B.A. et al., The baculovirus structure defines the hallmarks of a new viral realm. To Be Published

Release Date

2024-11-06

Peptides

Major capsid protein: ABCDEFUVWXYZ
Capsid-associated protein VP80: GHI012
Occlusion-derived virus envelope protein E27: JMQS36
Protein C42: KLRT45
Protein AC109: N7
Protein AC142: O8
38K (AC98) protein in P143-LEF5 intergenic region: P9

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

U
V

V
W

W
X

X
Y

Y
Z

Z
a

G
G

H
H

I
I

0
b

1
c

2
d

J
J

M
M

Q
Q

S
S

3
e

6
h

K
K

L
L

R
R

T
T

4
f

5
g

N
N

7
i

O
O

8
j

P
P

9
k

Major capsid protein

Capsid-associated protein VP80

Occlusion-derived virus envelope protein E27

Protein C42

Protein AC109

Protein AC142

38K (AC98) protein in P143-LEF5 intergenic region

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