SMTL ID : 8w6l.1

Crystal structure of the SLA-2*1001 allele and ASFV antigenic peptide at 2.2A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

hetero-1-1-mer

Ligands

1 x THR- MET- TYR- SER- LEU- GLY- TYR- ILE- PHE: THR-MET-TYR-SER-LEU-GLY-TYR-ILE-PHE(Non-covalent)

THR-MET-TYR-SER-LEU-GLY-TYR-ILE-PHE.1: 31 residues within 4Å: Chain A: Y.7, Y.9, I.24, M.45, Y.59, R.62, E.63, I.66, S.67, N.77, T.80, L.81, Y.84, L.95, R.97, Y.99, D.114, D.116, Y.123, W.133, S.143, K.146, R.147, A.150, E.152, R.155, M.156, Y.159, R.163, W.167, Y.171 30 PLIP interactions: 30 interactions with chain A Hydrophobic interactions: A:Y.59, A:L.81, A:L.81, A:L.95, A:D.116, A:Y.123, A:W.133, A:K.146, A:A.150, A:Y.159, A:W.167 Hydrogen bonds: A:R.62, A:R.62, A:E.63, A:Y.99, A:D.116, A:K.146, A:R.147, A:R.147, A:E.152, A:Y.159, A:R.163, A:R.163, A:Y.171, A:Y.171 Water bridges: A:N.70, A:N.77 pi-Cation interactions: A:R.97, A:R.147, A:R.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, S., Crystal structure of the SLA-2*1001 allele and ASFV antigenic peptide at 2.2A resolution. To Be Published

Release Date

2024-08-07

Peptides

MHC class I antigen: A
Beta-2-microglobulin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MHC class I antigen

Beta-2-microglobulin

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