SMTL ID : 8whz.1

BA.2.86 RBD in complex with hACE2 (local refinement)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.356, E.357, H.360, E.384 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.356, A:H.360, A:E.384, A:E.384

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: R.151, W.253 Ligand excluded by PLIP

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: S.402, S.527, N.528 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.528 NAG.4: 3 residues within 4Å: Chain A: K.8, N.72, T.74 No protein-ligand interaction detected (PLIP) NAG.5: 3 residues within 4Å: Chain A: K.291, V.298, N.304 No protein-ligand interaction detected (PLIP) NAG.6: 4 residues within 4Å: Chain A: N.35, T.37, N.40, Q.322 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.322 NAG.7: 2 residues within 4Å: Chain B: N.22, R.23 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.23, B:R.23 NAG.8: 2 residues within 4Å: Chain B: N.11, F.39 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:F.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, P. et al., Spike N354 glycosylation augments SARS-CoV-2 fitness for human adaptation through structural plasticity. Natl Sci Rev (2024)

Release Date

2024-06-26

Peptides

Processed angiotensin-converting enzyme 2: A
Spike protein S1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Processed angiotensin-converting enzyme 2

Spike protein S1

Related Entries With Identical Sequence