SMTL ID : 8x7h.3 (3 other biounits)

Crystal structure of the ternary complex of GID4-PROTAC(NEP162)-BRD4(BD1).

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-mer

Ligands

1 x YBI: ~{N}-[4-[6-[3-[4-[2-[(9~{S})-7-(4-chlorophenyl)-4,5,13-trimethyl-3-thia-1,8,11,12-tetrazatricyclo[8.3.0.0^{2,6}]trideca-2(6),4,7,10,12-pentaen-9-yl]ethanoyl]piperazin-1-yl]propoxy]-1~{H}-benzimidazol-2-yl]cyclohexyl]-2-(1~{H}-indol-2-ylmethylamino)ethanamide

YBI.1: 24 residues within 4Å: Chain A: Q.10, I.39, L.42, L.49, T.51, E.115, S.131, F.132, Y.136, Y.151, H.153, S.155, S.156, Q.160 Chain B: P.40, F.41, V.45, L.52, Y.55, Y.97, N.98, D.103, I.104, M.107 18 PLIP interactions: 6 interactions with chain B, 12 interactions with chain A Hydrophobic interactions: B:P.40, B:F.41, B:V.45, B:Y.97, B:I.104, A:L.42, A:L.49, A:T.51, A:F.132, A:Y.151, A:Y.151 Hydrogen bonds: B:N.98, A:Q.10, A:E.115, A:E.115, A:S.131, A:Y.136, A:S.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, C. et al., Crystal structure of 162. To Be Published

Release Date

2025-03-26

Peptides

Glucose-induced degradation protein 4 homolog: A
Bromodomain-containing protein 4: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

Glucose-induced degradation protein 4 homolog

Bromodomain-containing protein 4

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