SMTL ID : 8y3g.2 (3 other biounits)

Cryo-EM structure of dengue virus serotype 2 strain D2Y98P-PP1 N153Q mutant at 4 deg C

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-15-15-mer

Ligands

15 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.67, F.90, M.118 Ligand excluded by PLIP NAG.2: 4 residues within 4Å: Chain C: N.67, R.89, F.90, M.118 Ligand excluded by PLIP NAG.3: 4 residues within 4Å: Chain E: N.67, R.89, F.90, M.118 Ligand excluded by PLIP NAG.4: 3 residues within 4Å: Chain G: N.67, F.90, M.118 Ligand excluded by PLIP NAG.5: 4 residues within 4Å: Chain I: N.67, R.89, F.90, M.118 Ligand excluded by PLIP NAG.6: 4 residues within 4Å: Chain K: N.67, R.89, F.90, M.118 Ligand excluded by PLIP NAG.7: 3 residues within 4Å: Chain M: N.67, F.90, M.118 Ligand excluded by PLIP NAG.8: 4 residues within 4Å: Chain O: N.67, R.89, F.90, M.118 Ligand excluded by PLIP NAG.9: 4 residues within 4Å: Chain Q: N.67, R.89, F.90, M.118 Ligand excluded by PLIP NAG.10: 3 residues within 4Å: Chain S: N.67, F.90, M.118 Ligand excluded by PLIP NAG.11: 4 residues within 4Å: Chain U: N.67, R.89, F.90, M.118 Ligand excluded by PLIP NAG.12: 4 residues within 4Å: Chain W: N.67, R.89, F.90, M.118 Ligand excluded by PLIP NAG.13: 3 residues within 4Å: Chain Y: N.67, F.90, M.118 Ligand excluded by PLIP NAG.14: 4 residues within 4Å: Chain 0: N.67, R.89, F.90, M.118 Ligand excluded by PLIP NAG.15: 4 residues within 4Å: Chain 2: N.67, R.89, F.90, M.118 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fibriansah, G. et al., Role of N-glycosylation at asparagine 153 of dengue envelope protein in immune response. To Be Published

Release Date

2025-01-29

Peptides

Envelope protein: ACEGIKMOQSUWY02
Membrane polyprotein: BDFHJLNPRTVXZ13

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

G
A

I
C

K
E

M
A

O
C

Q
E

S
A

U
C

W
E

Y
A

0
C

2
E

B
B

D
D

F
F

H
B

J
D

L
F

N
B

P
D

R
F

T
B

V
D

X
F

Z
B

1
D

3
F

Envelope protein

Membrane polyprotein

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