SMTL ID : 8y3l.4 (3 other biounits)

Cryo-EM structure of dengue virus serotype 2 strain D2Y98P-PP1 in complex with human antibody C10 Fab at 37 deg C

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-2-2-mer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.67, F.90 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.90 Hydrogen bonds: A:N.67 NAG.2: 4 residues within 4Å: Chain C: N.67, R.89, F.90, M.118 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:F.90 Hydrogen bonds: C:N.67 NAG.3: 4 residues within 4Å: Chain C: N.149, N.153, K.157 Chain E: G.102 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.157 NAG.4: 1 residues within 4Å: Chain E: N.67 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fibriansah, G. et al., Role of N-glycosylation at asparagine 153 of dengue envelope protein in immune response. To Be Published

Release Date

2025-01-29

Peptides

Envelope protein: ACE
Membrane polyprotein: BDF
Human antibody C10 Fab (heavy chain): GI
Human antibody C10 Fab (light chain): HJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

G
G

I
K

H
H

J
L

Envelope protein

Membrane polyprotein

Human antibody C10 Fab (heavy chain)

Human antibody C10 Fab (light chain)

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