SMTL ID : 8y3l.2 (3 other biounits)

Cryo-EM structure of dengue virus serotype 2 strain D2Y98P-PP1 in complex with human antibody C10 Fab at 37 deg C

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-15-15-10-10-mer

Ligands

20 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.67, F.90 Ligand excluded by PLIP NAG.2: 4 residues within 4Å: Chain C: N.67, R.89, F.90, M.118 Ligand excluded by PLIP NAG.3: 4 residues within 4Å: Chain C: N.149, N.153, K.157 Chain E: G.102 Ligand excluded by PLIP NAG.4: 1 residues within 4Å: Chain E: N.67 Ligand excluded by PLIP NAG.5: 2 residues within 4Å: Chain K: N.67, F.90 Ligand excluded by PLIP NAG.6: 4 residues within 4Å: Chain M: N.67, R.89, F.90, M.118 Ligand excluded by PLIP NAG.7: 4 residues within 4Å: Chain M: N.149, N.153, K.157 Chain O: G.102 Ligand excluded by PLIP NAG.8: 1 residues within 4Å: Chain O: N.67 Ligand excluded by PLIP NAG.9: 2 residues within 4Å: Chain U: N.67, F.90 Ligand excluded by PLIP NAG.10: 4 residues within 4Å: Chain W: N.67, R.89, F.90, M.118 Ligand excluded by PLIP NAG.11: 4 residues within 4Å: Chain W: N.149, N.153, K.157 Chain Y: G.102 Ligand excluded by PLIP NAG.12: 1 residues within 4Å: Chain Y: N.67 Ligand excluded by PLIP NAG.13: 2 residues within 4Å: Chain 4: N.67, F.90 Ligand excluded by PLIP NAG.14: 4 residues within 4Å: Chain 6: N.67, R.89, F.90, M.118 Ligand excluded by PLIP NAG.15: 4 residues within 4Å: Chain 6: N.149, N.153, K.157 Chain 8: G.102 Ligand excluded by PLIP NAG.16: 1 residues within 4Å: Chain 8: N.67 Ligand excluded by PLIP NAG.17: 2 residues within 4Å: Chain e: N.67, F.90 Ligand excluded by PLIP NAG.18: 4 residues within 4Å: Chain g: N.67, R.89, F.90, M.118 Ligand excluded by PLIP NAG.19: 4 residues within 4Å: Chain g: N.149, N.153, K.157 Chain i: G.102 Ligand excluded by PLIP NAG.20: 1 residues within 4Å: Chain i: N.67 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fibriansah, G. et al., Role of N-glycosylation at asparagine 153 of dengue envelope protein in immune response. To Be Published

Release Date

2025-01-29

Peptides

Envelope protein: ACEKMOUWY468egi
Membrane polyprotein: BDFLNPVXZ579fhj
Human antibody C10 Fab (heavy chain): GIQS02ackm
Human antibody C10 Fab (light chain): HJRT13bdln

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

K
A

M
C

O
E

U
A

W
C

Y
E

4
A

6
C

8
E

e
A

g
C

i
E

B
B

D
D

F
F

L
B

N
D

P
F

V
B

X
D

Z
F

5
B

7
D

9
F

f
B

h
D

j
F

G
G

I
K

Q
G

S
K

0
G

2
K

a
G

c
K

k
G

m
K

H
H

J
L

R
H

T
L

1
H

3
L

b
H

d
L

l
H

n
L

Envelope protein

Membrane polyprotein

Human antibody C10 Fab (heavy chain)

Human antibody C10 Fab (light chain)

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