SMTL ID : 8y3j.4 (3 other biounits)

Cryo-EM structure of dengue virus serotype 2 strain D2Y98P-PP1 at 4 deg C

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: N.149, N.153, T.155, K.157, H.158 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:K.157 NAG-NAG.2: 7 residues within 4Å: Chain C: N.149, N.153, T.155, G.156, K.157, H.158 Chain E: G.102 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 7 residues within 4Å: Chain C: G.102 Chain E: N.149, N.153, T.155, G.156, K.157, H.158 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain A: N.67, M.118 No protein-ligand interaction detected (PLIP) NAG.5: 4 residues within 4Å: Chain C: N.67, R.89, F.90, M.118 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:F.90 Hydrogen bonds: C:N.67 NAG.6: 3 residues within 4Å: Chain E: N.67, R.89, F.90 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:R.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fibriansah, G. et al., Role of N-glycosylation at asparagine 153 of dengue envelope protein in immune response. To Be Published

Release Date

2025-01-29

Peptides

Envelope protein: ACE
Membrane polyprotein: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

Envelope protein

Membrane polyprotein

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