SMTL ID : 9eee.1

Room-temperature X-ray structure of HIV-1 protease in complex with GRL-10624A inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

1 x 01: (3S,3aS,4S,7R,8aS)-3-methylhexahydro-1H,3H-3a,7-epoxycyclohepta[c]furan-4-yl {(2S,3R)-3-hydroxy-4-[(4-methoxybenzene-1-sulfonyl)(2-methylpropyl)amino]-1-phenylbutan-2-yl}carbamate

01.1: 23 residues within 4Å: Chain A: D.25, G.27, A.28, D.29, D.30, I.47, G.48, G.49, I.50, V.82, I.84 Chain B: R.8, D.25, G.27, A.28, D.29, D.30, V.32, G.48, G.49, P.81, V.82, I.84 19 PLIP interactions: 9 interactions with chain A, 10 interactions with chain B Hydrophobic interactions: A:I.47, A:V.82, A:I.84, B:A.28, B:V.32, B:P.81, B:V.82, B:I.84 Hydrogen bonds: A:G.27, A:G.27, A:D.29, B:R.8, B:D.29, B:D.30, B:D.30 Water bridges: A:I.50, A:I.50 Salt bridges: A:D.25, B:D.25

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: W.6 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain B: G.73, T.74, N.88 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ghosh, A.K. et al., Potent HIV‐1 protease inhibitors containing oxabicyclo octanol-derived P2-ligands: Design, synthesis, and X‐ray structural studies of inhibitor-HIV-1 protease complexes. Bioorg.Med.Chem.Lett. (2025)

Release Date

2025-02-05

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protease

Related Entries With Identical Sequence