SMTL ID : 9ey1.1

Human mitochondrial RNase Z with tRNA-His precursor

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-4-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: S.461, H.517, D.521, H.522, D.637, H.695 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.521, A:H.522, A:D.637, A:H.695

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.2: 9 residues within 4Å: Chain A: Q.67, R.352, K.466, Q.698, R.699, K.702 Chain F: U.1, A.66, C.67 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Q.67, A:Q.698, A:R.699, A:K.702 Salt bridges: A:R.352, A:K.466, A:K.466, A:K.466, A:K.702, A:K.702

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.3: 20 residues within 4Å: Chain F: A.8 Chain G: L.221, T.222, A.223, D.224, I.240, G.241, F.243, D.245, Q.249, P.250, S.253, C.266, L.267, L.269, K.280, N.281, L.282, L.284, M.287 10 PLIP interactions: 10 interactions with chain G Hydrogen bonds: G:G.241, G:G.241, G:D.245, G:D.245, G:G.251, G:S.253, G:S.253, G:L.267, G:K.280, G:L.282

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Valentin Gese, G. et al., Structural basis of 3'-tRNA maturation by the human mitochondrial RNase Z complex. Embo J. (2024)

Release Date

2024-11-13

Peptides

Zinc phosphodiesterase ELAC protein 2: A
3-hydroxyacyl-CoA dehydrogenase type-2: BCDE
tRNA methyltransferase 10 homolog C: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
A

C
B

D
C

E
D

G
F

Zinc phosphodiesterase ELAC protein 2

3-hydroxyacyl-CoA dehydrogenase type-2

tRNA methyltransferase 10 homolog C

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