SMTL ID : 9f6f.1

Human DNA polymerase epsilon bound to DNA and PCNA (closed conformation)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-3-mer

Ligands

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 4 residues within 4Å: Chain A: C.651, C.654, C.663, C.747 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.651, A:C.654, A:C.663, A:C.747

1 x DDS: 2',3'-dideoxyadenosine triphosphate(Non-covalent)

DDS.2: 13 residues within 4Å: Chain A: V.627, A.629, M.630, Y.631, R.765, K.769, K.809, N.813, Y.816, D.862 Chain E: A.24 Chain F: T.14, T.15 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.631 Hydrogen bonds: A:A.629, A:M.630, A:N.813, A:D.862 Salt bridges: A:R.765, A:K.769, A:K.809

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roske, J.J. et al., Structural basis for processive daughter-strand synthesis and proofreading by the human leading-strand DNA polymerase Pol epsilon. Nat.Struct.Mol.Biol. (2024)

Release Date

2024-08-07

Peptides

DNA polymerase epsilon catalytic subunit A: A
Proliferating cell nuclear antigen: BCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

DNA polymerase epsilon catalytic subunit A

Proliferating cell nuclear antigen

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