SMTL ID : 9fhc.1

Crystallographic structure of AcrB V612F with bound minocycline

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-3-3-mer

Ligands

3 x MIY: (4S,4AS,5AR,12AS)-4,7-BIS(DIMETHYLAMINO)-3,10,12,12A-TETRAHYDROXY-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2- CARBOXAMIDE(Non-covalent)

MIY.1: 11 residues within 4Å: Chain A: S.48, Q.125, L.177, F.178, G.179, S.180, E.273, N.274, I.277, F.612, F.615 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.178, A:F.178, A:I.277, A:F.612, A:F.615 Hydrogen bonds: A:S.48, A:S.48, A:Q.125, A:N.274, A:N.274, A:I.277 Water bridges: A:Q.125, A:E.273, A:N.274 Salt bridges: A:E.273 MIY.2: 11 residues within 4Å: Chain C: S.48, Q.125, L.177, F.178, G.179, S.180, E.273, N.274, I.277, F.612, F.615 15 PLIP interactions: 15 interactions with chain C Hydrophobic interactions: C:F.178, C:F.178, C:I.277, C:F.612, C:F.615 Hydrogen bonds: C:S.48, C:S.48, C:Q.125, C:N.274, C:N.274, C:I.277 Water bridges: C:Q.125, C:E.273, C:N.274 Salt bridges: C:E.273 MIY.3: 11 residues within 4Å: Chain E: S.48, Q.125, L.177, F.178, G.179, S.180, E.273, N.274, I.277, F.612, F.615 15 PLIP interactions: 15 interactions with chain E Hydrophobic interactions: E:F.178, E:F.178, E:I.277, E:F.612, E:F.615 Hydrogen bonds: E:S.48, E:S.48, E:Q.125, E:N.274, E:N.274, E:I.277 Water bridges: E:Q.125, E:E.273, E:N.274 Salt bridges: E:E.273

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lazarova, M. et al., Crystallographic structure of AcrB V612F with bound minocycline. To Be Published

Release Date

2025-06-11

Peptides

Multidrug efflux pump subunit AcrB: ACE
DARPIN: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

B
B

D
B

F
B

Membrane

We predict this structure to be a membrane protein.
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Multidrug efflux pump subunit AcrB

DARPIN

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