SMTL ID : 9g94.2 (2 other biounits)

Crystal structure of HRP-2 PWWP domain in complex with compound 32

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

monomer

Ligands

1 x 01: 4-(4-bromanyl-1~{H}-pyrazol-3-yl)pyridine

01.1: 6 residues within 4Å: Chain A: M.16, Y.19, W.22, F.45, T.48, E.50 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:M.16, A:Y.19 Hydrogen bonds: A:E.50 pi-Stacking: A:W.22, A:W.22, A:F.45

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: K.76, G.77, F.78, N.79, E.80 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.77, A:N.79, A:N.79, A:E.80 Water bridges: A:F.78 SO4.3: 4 residues within 4Å: Chain A: K.15, K.17, G.18, Y.19 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.18, A:Y.19 Water bridges: A:K.15 Salt bridges: A:K.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vantieghem, T. et al., Rational fragment-based design of compounds targeting the PWWP domain of the HRP family. Eur.J.Med.Chem. (2024)

Release Date

2024-11-06

Peptides

Hepatoma-derived growth factor-related protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Hepatoma-derived growth factor-related protein 2

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