SMTL ID : 9grt.3 (2 other biounits)

Crystal structure of HRP-2 PWWP domain in complex with compound 29

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

monomer

Ligands

1 x BYZ: 4-bromo-1H-pyrazole(Non-covalent)

BYZ.1: 5 residues within 4Å: Chain A: Y.19, W.22, F.45, T.48, E.50 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.48, A:T.48 pi-Stacking: A:F.45

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: K.40, F.53, G.55, K.57, D.58 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:F.53, A:G.55, A:D.58 Water bridges: A:K.40, A:K.40, A:K.40 Salt bridges: A:K.40, A:K.57 SO4.3: 3 residues within 4Å: Chain A: Y.19, R.75, K.76 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.76 Water bridges: A:Y.19 Salt bridges: A:R.75 SO4.4: 2 residues within 4Å: Chain A: K.15, K.17 5 PLIP interactions: 5 interactions with chain A Water bridges: A:K.15, A:K.15, A:K.15 Salt bridges: A:K.15, A:K.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vantieghem, T. et al., Rational fragment-based design of compounds targeting the PWWP domain of the HRP family. Eur.J.Med.Chem. (2024)

Release Date

2024-11-06

Peptides

Hepatoma-derived growth factor-related protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Hepatoma-derived growth factor-related protein 2

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