SMTL ID : 9gru.3 (2 other biounits)

Crystal structure of HRP-2 PWWP domain in complex with compound 30

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x PYZ: 4-IODOPYRAZOLE(Non-covalent)

PYZ.1: 6 residues within 4Å: Chain A: M.16, Y.19, W.22, F.45, T.48, E.50 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.48, A:E.50, A:E.50 pi-Stacking: A:W.22, A:W.22, A:F.45

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: K.40, F.53, L.54, G.55, D.58 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.53, A:G.55, A:D.58 Salt bridges: A:K.40, A:K.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vantieghem, T. et al., Rational fragment-based design of compounds targeting the PWWP domain of the HRP family. Eur.J.Med.Chem. (2024)

Release Date

2024-11-06

Peptides

Hepatoma-derived growth factor-related protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Hepatoma-derived growth factor-related protein 2

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