SMTL ID : 9grc.1

Cryo-EM structure of lipoprotein-bound LolCDE in nanodiscs

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-2-1-mer

Ligands

1 x Z41: (2S)-3-hydroxypropane-1,2-diyl dihexadecanoate(Covalent)

Z41.1: 14 residues within 4Å: Chain A: A.40, T.43, V.47, M.48, M.266, M.267, L.269, L.270, L.340, I.347 Chain B: M.267, I.268 Chain E: C.1 Ligands: PLM.2 8 PLIP interactions: 6 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:A.40, A:T.43, A:V.47, A:L.270, A:L.340, A:I.347, B:I.268, B:I.268

1 x PLM: PALMITIC ACID(Covalent)

PLM.2: 8 residues within 4Å: Chain B: A.47, M.48, F.51, Y.260, D.264, L.371 Chain E: C.1 Ligands: Z41.1 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:A.47, B:F.51, B:L.371 Hydrogen bonds: B:D.264

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qiao, W. et al., Deciphering the molecular basis of lipoprotein recognition and transport by LolCDE. Signal Transduct Target Ther (2024)

Release Date

2025-01-08

Peptides

Lipoprotein-releasing system transmembrane protein LolC: A
Lipoprotein-releasing system transmembrane protein LolE: B
Lipoprotein-releasing system ATP-binding protein LolD: CD
lipoprotein(LPP): E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
E

C
F

D
D

E
V

Membrane

We predict this structure to be a membrane protein.
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Lipoprotein-releasing system transmembrane protein LolC

Lipoprotein-releasing system transmembrane protein LolE

Lipoprotein-releasing system ATP-binding protein LolD

lipoprotein(LPP)

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