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SMTL ID : 9grd.1

Cryo-electron microscopy structure of glucose/xylose isomerase from Streptomyces rubiginosus with cobalt ions in the active site

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

8 x CO: COBALT (II) ION

CO.1:	5 residues within 4Å: Chain A: E.217, H.220, N.247, D.255, D.257 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.220, A:D.255, A:D.255, A:D.257, A:D.257
CO.2:	4 residues within 4Å: Chain A: E.181, E.217, D.245, D.287 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.181, A:E.217, A:D.245, A:D.287
CO.3:	5 residues within 4Å: Chain B: E.217, H.220, N.247, D.255, D.257 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:H.220, B:D.255, B:D.255, B:D.257, B:D.257
CO.4:	4 residues within 4Å: Chain B: E.181, E.217, D.245, D.287 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.181, B:E.217, B:D.245, B:D.287
CO.5:	5 residues within 4Å: Chain C: E.217, H.220, N.247, D.255, D.257 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:H.220, C:D.255, C:D.255, C:D.257, C:D.257
CO.6:	4 residues within 4Å: Chain C: E.181, E.217, D.245, D.287 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:E.181, C:E.217, C:D.245, C:D.287
CO.7:	5 residues within 4Å: Chain D: E.217, H.220, N.247, D.255, D.257 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:H.220, D:D.255, D:D.255, D:D.257, D:D.257
CO.8:	4 residues within 4Å: Chain D: E.181, E.217, D.245, D.287 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:E.181, D:E.217, D:D.245, D:D.287

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Slawek, J. et al., Cryo-electron microscopy structure of glucose/xylose isomerase from Streptomyces rubiginosus with cobalt ions in the active site. To Be Published

Release Date

2024-10-02

Peptides

Xylose isomerase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

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NGLPV2D

Xylose isomerase

Toggle Identical (ABCD)

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