SMTL ID : 9gre.1

Cryo-electron microscopy structure of glucose/xylose isomerase from Streptomyces rubiginosus with magnesium ions in the active site

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

8 x MG: MAGNESIUM ION

MG.1: 4 residues within 4Å: Chain A: E.217, H.220, D.255, D.257 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.217, A:H.220, A:D.255, A:D.255, A:D.257 MG.2: 4 residues within 4Å: Chain A: E.181, E.217, D.245, D.287 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.181, A:E.217, A:D.245, A:D.287 MG.3: 4 residues within 4Å: Chain B: E.217, H.220, D.255, D.257 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.217, B:H.220, B:D.255, B:D.255, B:D.257 MG.4: 4 residues within 4Å: Chain B: E.181, E.217, D.245, D.287 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.181, B:E.217, B:D.245, B:D.287 MG.5: 4 residues within 4Å: Chain C: E.217, H.220, D.255, D.257 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:E.217, C:H.220, C:D.255, C:D.255, C:D.257 MG.6: 4 residues within 4Å: Chain C: E.181, E.217, D.245, D.287 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:E.181, C:E.217, C:D.245, C:D.287 MG.7: 4 residues within 4Å: Chain D: E.217, H.220, D.255, D.257 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:E.217, D:H.220, D:D.255, D:D.255, D:D.257 MG.8: 4 residues within 4Å: Chain D: E.181, E.217, D.245, D.287 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:E.181, D:E.217, D:D.245, D:D.287

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Slawek, J. et al., Cryo-electron microscopy structure of glucose/xylose isomerase from Streptomyces rubiginosus with magnesium ions in the active site. To Be Published

Release Date

2024-10-02

Peptides

Xylose isomerase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Xylose isomerase

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