SMTL ID : 9im8.1 (1 other biounit)

Mutated ADP-ribosyltransferase 2 (PARP2) catalytic domain bound to a pyrimidine 2,4-diketone derivative inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: S.100, I.103, Q.104, E.107, G.226, Y.227 Ligands: 01.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.100, A:S.100 Water bridges: A:Q.96

1 x 01: 5-ethyl-1-[[3-[(3~{R})-4-ethyl-3-(2-hydroxyethyl)piperazin-1-yl]carbonyl-4-fluoranyl-phenyl]methyl]pyrimidine-2,4-dione

01.2: 18 residues within 4Å: Chain A: E.107, H.200, G.201, L.215, R.216, I.217, A.218, Y.227, G.232, I.233, Y.234, F.235, A.236, K.241, S.242, Y.245, E.330 Ligands: GOL.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.234, A:A.236, A:E.330 Hydrogen bonds: A:G.201, A:G.201, A:R.216, A:Y.234 Salt bridges: A:E.107 pi-Stacking: A:Y.234, A:Y.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, X.Y. et al., Mutated ADP-ribosyltransferase 2 (PARP2) catalytic domain bound to a pyrimidine 2,4-diketone derivative inhibitor. To Be Published

Release Date

2025-07-09

Peptides

Poly [ADP-ribose] polymerase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Poly [ADP-ribose] polymerase 2

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