SMTL ID : 9jor.1

structure of phage T4 topoisomerase II central domain bound with DNA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain B: E.415, D.557, D.559, G.562 Chain F: T.10, A.11 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.415, B:D.557 MG.2: 5 residues within 4Å: Chain B: A.419, D.557, L.629 Chain C: Y.117 Chain F: A.11 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.557 MG.3: 5 residues within 4Å: Chain A: Y.117 Chain D: G.416, A.419, D.557 Chain E: A.10 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Y.T. et al., structure of phage T4 topoisomerase II central domain bound with DNA. To be published

Release Date

2025-10-22

Peptides

DNA topoisomerase medium subunit: AC
DNA topoisomerase large subunit,DNA topoisomerase small subunit: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

C
D

B
A

D
B

DNA topoisomerase medium subunit

DNA topoisomerase large subunit,DNA topoisomerase small subunit

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