SMTL ID : 9mp7.1

Mix & Quench Time Resolved Lysozyme - NAG1 Complex (300 ms)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)

NDG.1: 10 residues within 4Å: Chain A: E.53, N.64, D.70, Q.75, I.76, N.77, I.116, A.125, W.126, V.127 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.116, A:A.125, A:W.126 Hydrogen bonds: A:N.64, A:N.77, A:N.77, A:A.125, A:A.125, A:V.127

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: Y.41 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: S.42, G.44, Q.139, I.142 Ligand excluded by PLIP CL.4: 6 residues within 4Å: Chain A: N.83, D.84, G.85, R.86, T.87, S.90 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain A: R.32, S.104, D.105, I.106 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.6: 5 residues within 4Å: Chain A: S.78, C.82, N.83, S.90, R.91 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.78, A:S.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Indergaard, J.A. et al., Instrumentation and methods for efficient time-resolved X-ray crystallography of biomolecular systems with sub-10 ms time resolution. Iucrj (2025)

Release Date

2025-05-07

Peptides

Lysozyme C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysozyme C

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