SMTL ID : 9nfr.1

Crystal structure of CRBN-DDB1 and MRT-23227 in complex with VAV1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: C.323, C.326, C.391, C.394 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.323, B:C.326, B:C.391, B:C.394

1 x 01: (3R)-3-{2-chloro-4'-[(1-methyl-1H-pyrazol-3-yl)methoxy][1,1'-biphenyl]-3-yl}piperidine-2,6-dione

01.2: 13 residues within 4Å: Chain B: N.351, P.352, H.353, E.377, H.378, S.379, W.380, W.386, W.400, F.402 Chain C: R.16, D.17, E.20 11 PLIP interactions: 10 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:N.351, B:P.352, B:E.377, B:W.386, B:W.400, B:W.400 Hydrogen bonds: B:H.378, B:H.378, B:W.380 Halogen bonds: B:E.377 pi-Cation interactions: C:R.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petzold, G. et al., Mining the CRBN Target Space Redefines Rules for Molecular Glue-induced Neosubstrate Recognition. To Be Published

Release Date

2025-07-09

Peptides

DNA damage-binding protein 1: A
Protein cereblon: B
Proto-oncogene vav: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

DNA damage-binding protein 1

Protein cereblon

Proto-oncogene vav

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