SMTL ID : 9ngt.1

Crystal structure of CRBN-DDB1 and FPFT-2216 in complex with mTOR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: C.323, C.326, C.391, C.394 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.323, B:C.326, B:C.391, B:C.394

1 x 01: (3S)-3-[(4M)-4-(4-methoxythiophen-3-yl)-1H-1,2,3-triazol-1-yl]piperidine-2,6-dione

01.2: 15 residues within 4Å: Chain B: N.351, P.352, H.353, E.377, H.378, S.379, W.380, W.386, W.400, F.402 Chain C: Y.72, M.73, K.74, S.75, G.76 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:W.380, B:W.386, B:W.400, B:F.402 Hydrogen bonds: B:N.351, B:H.378, B:H.378, B:W.380

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petzold, G. et al., Mining the CRBN Target Space Redefines Rules for Molecular Glue-induced Neosubstrate Recognition. To Be Published

Release Date

2025-07-09

Peptides

DNA damage-binding protein 1: A
Protein cereblon: B
Serine/threonine-protein kinase mTOR: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

DNA damage-binding protein 1

Protein cereblon

Serine/threonine-protein kinase mTOR

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