SMTL ID : 9o9n.1

Crystal structure of PPARgamma ligand binding domain (LBD) in complex with NCoR1 corepressor peptide and inverse agonist FX-909

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 01: (3P)-3-(5,7-difluoro-4-oxo-1,4-dihydroquinolin-2-yl)-4-(methanesulfonyl)benzonitrile

01.1: 13 residues within 4Å: Chain A: F.81, C.84, Q.85, H.122, Y.126, F.162, M.163, K.166, V.245, H.248, Y.272, L.275, Y.276 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.81, A:F.81, A:Y.276 Water bridges: A:F.81, A:Q.85 pi-Stacking: A:H.248, A:H.248, A:Y.276

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Laughlin, Z.T. et al., Structural basis of PPARgamma-mediated transcriptional repression by the covalent inverse agonist FX-909. To Be Published

Release Date

2025-05-14

Peptides

Peroxisome proliferator-activated receptor gamma: A
Nuclear receptor corepressor 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Peroxisome proliferator-activated receptor gamma

Nuclear receptor corepressor 1

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