Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) interactions

Interactions downloaded from IntAct. Only interactions between SARS-CoV-2 and the human host proteins are shown.

Host translation inhibitor nsp1 (25 interactions)
Non-structural protein 2 (nsp2) (25 interactions)
Non-structural protein 3 (nsp3) (31 interactions)
Non-structural protein 4 (nsp4) (58 interactions)
3C-like proteinase (3CL-PRO) (8 interactions)
Non-structural protein 6 (nsp6) (83 interactions)
Non-structural protein 7 (nsp7) (44 interactions)
Non-structural protein 8 (nsp8) (56 interactions)
Non-structural protein 9 (nsp9) (24 interactions)
Non-structural protein 10 (nsp10) (33 interactions)
Non-structural protein 11 (4 interactions)
RNA-directed RNA polymerase (Pol) (38 interactions)
Helicase (Hel) (67 interactions)
Proofreading exoribonuclease (ExoN) (26 interactions)
Uridylate-specific endoribonuclease (56 interactions)
UniProtKB AC
(Name)		UniProtKB Section
 
Homology Model
 
Experimental Structure 		OrganismDescriptionReferences
O00411
(RPOM_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		DNA-directed RNA polymerase, mitochondrial;EBI-25509874
O15226
(NKRF_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		NF-kappa-B-repressing factor;
Protein ITBA4;		EBI-25509874
O15381
(NVL_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Nuclear valosin-containing protein-like;EBI-25509874
O43395
(PRPF3_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		U4/U6 small nuclear ribonucleoprotein Prp3;
Pre-mRNA-splicing factor 3;
U4/U6 snRNP 90 kDa protein;		EBI-25509874
O60293
(ZC3H1_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Zinc finger C3H1 domain-containing protein;
Coiled-coil domain-containing protein 131;
Proline/serine-rich coiled-coil protein 2;		EBI-25509874
O60832
(DKC1_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		H/ACA ribonucleoprotein complex subunit DKC1;
CBF5 homolog;
Dyskerin;
Nopp140-associated protein of 57 kDa;
Nucleolar protein NAP57;
Nucleolar protein family A member 4;
snoRNP protein DKC1;		EBI-25509874
O75569
(PRKRA_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Interferon-inducible double-stranded RNA-dependent protein kinase activator A;
PKR-associated protein X;
PKR-associating protein X;
Protein activator of the interferon-induced protein kinase;
Protein kinase, interferon-inducible double-stranded RNA-dependent activator;		EBI-25509874
O75934
(SPF27_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Pre-mRNA-splicing factor SPF27;
Breast carcinoma-amplified sequence 2;
DNA amplified in mammary carcinoma 1 protein;
Spliceosome-associated protein SPF 27;		EBI-25509874
O76021
(RL1D1_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Ribosomal L1 domain-containing protein 1;
CATX-11;
Cellular senescence-inhibited gene protein;
Protein PBK1;		EBI-25509874
O95104
(SCAF4_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		SR-related and CTD-associated factor 4;
CTD-binding SR-like protein RA4;
Splicing factor, arginine/serine-rich 15;		EBI-25509874
P08708
(RS17_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Small ribosomal subunit protein eS17;
40S ribosomal protein S17;		EBI-25509874
P08865
(RSSA_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Small ribosomal subunit protein uS2;
37 kDa laminin receptor precursor;
37/67 kDa laminin receptor;
40S ribosomal protein SA;
67 kDa laminin receptor;
Colon carcinoma laminin-binding protein;
Laminin receptor 1;
Laminin-binding protein precursor p40;
Multidrug resistance-associated protein MGr1-Ag;
NEM/1CHD4;		EBI-25509874
P26599
(PTBP1_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Polypyrimidine tract-binding protein 1;
57 kDa RNA-binding protein PPTB-1;
Heterogeneous nuclear ribonucleoprotein I;		EBI-25509874
P35251
(RFC1_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Replication factor C subunit 1;
Activator 1 140 kDa subunit;
Activator 1 large subunit;
Activator 1 subunit 1;
DNA-binding protein PO-GA;
Replication factor C 140 kDa subunit;
Replication factor C large subunit;		EBI-25509874
P40938
(RFC3_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Replication factor C subunit 3;
Activator 1 38 kDa subunit;
Activator 1 subunit 3;
Replication factor C 38 kDa subunit;		EBI-25509874
P42285
(MTREX_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Exosome RNA helicase MTR4;
ATP-dependent RNA helicase DOB1;
ATP-dependent RNA helicase SKIV2L2;
Superkiller viralicidic activity 2-like 2;
TRAMP-like complex helicase;		EBI-25509874
P42696
(RBM34_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		RNA-binding protein 34;
RNA-binding motif protein 34;		EBI-25509874
P46087
(NOP2_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase;
Nucleolar protein 1;
Nucleolar protein 2 homolog;
Proliferating-cell nucleolar antigen p120;
Proliferation-associated nucleolar protein p120;		EBI-25509874
P46782
(RS5_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Small ribosomal subunit protein uS7;
40S ribosomal protein S5;		EBI-25509874
P46783
(RS10_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Small ribosomal subunit protein eS10;
40S ribosomal protein S10;		EBI-25509874
P61970
(NTF2_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Nuclear transport factor 2;
Placental protein 15;		EBI-25490898
P62263
(RS14_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Small ribosomal subunit protein uS11;
40S ribosomal protein S14;		EBI-25509874
P62269
(RS18_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Small ribosomal subunit protein uS13;
40S ribosomal protein S18;
Ke-3;		EBI-25509874
P62330
(ARF6_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		ADP-ribosylation factor 6;EBI-25490898
P63244
(RACK1_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Small ribosomal subunit protein RACK1;
Cell proliferation-inducing gene 21 protein;
Guanine nucleotide-binding protein subunit beta-2-like 1;
Guanine nucleotide-binding protein subunit beta-like protein 12.3;
Human lung cancer oncogene 7 protein;
Receptor for activated C kinase;
Receptor of activated protein C kinase 1;		EBI-25509874
Q12788
(TBL3_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Transducin beta-like protein 3;
WD repeat-containing protein SAZD;		EBI-25509874
Q12789
(TF3C1_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		General transcription factor 3C polypeptide 1;
TF3C-alpha;
TFIIIC box B-binding subunit;
Transcription factor IIIC 220 kDa subunit;
Transcription factor IIIC subunit alpha;		EBI-25509874
Q13243
(SRSF5_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Serine/arginine-rich splicing factor 5;
Delayed-early protein HRS;
Pre-mRNA-splicing factor SRP40;
Splicing factor, arginine/serine-rich 5;		EBI-25509874
Q13523
(PRP4B_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Serine/threonine-protein kinase PRP4 homolog;
PRP4 kinase;
PRP4 pre-mRNA-processing factor 4 homolog;		EBI-25509874
Q13868
(EXOS2_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Exosome complex component RRP4;
Exosome component 2;
Ribosomal RNA-processing protein 4;		EBI-25509874
Q14137
(BOP1_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Ribosome biogenesis protein BOP1;
Block of proliferation 1 protein;		EBI-25509874
Q14498
(RBM39_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		RNA-binding protein 39;
CAPER alpha;
Hepatocellular carcinoma protein 1;
RNA-binding motif protein 39;
RNA-binding region-containing protein 2;
Splicing factor HCC1;		EBI-25509874
Q15020
(SART3_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Squamous cell carcinoma antigen recognized by T-cells 3;
Tat-interacting protein of 110 kDa;
p110 nuclear RNA-binding protein;		EBI-25509874
Q15024
(EXOS7_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Exosome complex component RRP42;
Exosome component 7;
Ribosomal RNA-processing protein 42;
p8;		EBI-25509874
Q1KMD3
(HNRL2_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Heterogeneous nuclear ribonucleoprotein U-like protein 2;
Scaffold-attachment factor A2;		EBI-25509874
Q2NL82
(TSR1_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Pre-rRNA-processing protein TSR1 homolog;EBI-25509874
Q5SSJ5
(HP1B3_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Heterochromatin protein 1-binding protein 3;
Protein HP1-BP74;		EBI-25509874
Q7Z2T5
(TRM1L_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		TRMT1-like protein;EBI-25509874
Q86UE4
(LYRIC_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Protein LYRIC;
3D3/LYRIC;
Astrocyte elevated gene-1 protein;
Lysine-rich CEACAM1 co-isolated protein;
Metadherin;
Metastasis adhesion protein;		EBI-25509874
Q8N9T8
(KRI1_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Protein KRI1 homolog;EBI-25509874
Q92974
(ARHG2_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Rho guanine nucleotide exchange factor 2;
Guanine nucleotide exchange factor H1;
Microtubule-regulated Rho-GEF;
Proliferating cell nucleolar antigen p40;		EBI-25509874
Q96SB4
(SRPK1_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		SRSF protein kinase 1;
SFRS protein kinase 1;
Serine/arginine-rich protein-specific kinase 1;		EBI-25509874
Q99848
(EBP2_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Probable rRNA-processing protein EBP2;
EBNA1-binding protein 2;
Nucleolar protein p40;		EBI-25509874
Q9BZE4
(GTPB4_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		GTP-binding protein 4;
Chronic renal failure gene protein;
GTP-binding protein NGB;
Nucleolar GTP-binding protein 1;		EBI-25509874
Q9H0D6
(XRN2_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		5'-3' exoribonuclease 2;
DHM1-like protein;		EBI-25509874
Q9H4P4
(RNF41_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		E3 ubiquitin-protein ligase NRDP1;
RING finger protein 41;
RING-type E3 ubiquitin transferase NRDP1;		EBI-25490898
Q9HC36
(MRM3_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		rRNA methyltransferase 3, mitochondrial;
16S rRNA (guanosine(1370)-2'-O)-methyltransferase;
16S rRNA [Gm1370] 2'-O-methyltransferase;
RNA methyltransferase-like protein 1;		EBI-25509874
Q9NWT1
(PK1IP_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		p21-activated protein kinase-interacting protein 1;
PAK/PLC-interacting protein 1;
PAK1-interacting protein 1;
WD repeat-containing protein 84;		EBI-25509874
Q9NX58
(LYAR_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Cell growth-regulating nucleolar protein;EBI-25509874
Q9P015
(RM15_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Large ribosomal subunit protein uL15m;
39S ribosomal protein L15, mitochondrial;		EBI-25509874
Q9UHX1
(PUF60_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Poly(U)-binding-splicing factor PUF60;
60 kDa poly(U)-binding-splicing factor;
FUSE-binding protein-interacting repressor;
Ro-binding protein 1;
Siah-binding protein 1;		EBI-25509874
Q9UJV9
(DDX41_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Probable ATP-dependent RNA helicase DDX41;
DEAD box protein 41;
DEAD box protein abstrakt homolog;		EBI-25509874
Q9UKD2
(MRT4_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		mRNA turnover protein 4 homolog;
Ribosome assembly factor MRTO4;		EBI-25509874
Q9UNQ2
(DIM1_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Probable dimethyladenosine transferase;
DIM1 dimethyladenosine transferase 1 homolog;
DIM1 dimethyladenosine transferase 1-like;
Probable 18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))-dimethyltransferase;
Probable 18S rRNA dimethylase;
Probable S-adenosylmethionine-6-N',N'-adenosyl(rRNA) dimethyltransferase;		EBI-25509874
Q9Y383
(LC7L2_HUMAN) 		Swiss-Prot
Homo sapiens
(Human)		Putative RNA-binding protein Luc7-like 2;EBI-25509874
2'-O-methyltransferase (3 interactions)
Spike glycoprotein (S glycoprotein) (29 interactions)
ORF3a protein (ORF3a) (365 interactions)
Protein 3b (1 interactions)
Envelope small membrane protein (E) (14 interactions)
Membrane protein (M) (216 interactions)
ORF6 protein (ORF6) (20 interactions)
ORF7a protein (ORF7a) (100 interactions)
ORF7b protein (ORF7b) (409 interactions)
ORF8 protein (ORF8) (116 interactions)
Nucleoprotein (N) (30 interactions)
ORF9b protein (ORF9b) (34 interactions)
Uncharacterized protein 14 (ORF14) (86 interactions)
ORF10 protein (29 interactions)