P00579 (RPOD_ECOLI) Escherichia coli (strain K12)

RNA polymerase sigma factor RpoD UniProtKBInterProSTRINGSTRINGInteractive Modelling

613 aa; Sequence (Fasta) Identical sequences: Escherichia coli: Q0P6L9

Sequence Features

 562Interaction with anti-sigma factors.
 573-592H-T-H motif.
 4-79RNA polymerase sigma factor 70, region 1 .1
IPR007127PF03979
 96-126RNA polymerase sigma-70 region 1.2
IPR009042PF00140
 137-348RNA polymerase sigma factor 70, non-esse ntial domain
IPR007631PF04546
 379-448RNA polymerase sigma-70 region 2
IPR007627PF04542
 458-533RNA polymerase sigma-70 region 3
IPR007624PF04539
 547-600RNA polymerase sigma-70 region 4
IPR007630PF04545

Sequence Alignments

Experimental structures

DescriptionOligo-stateLigandsStructureRangeDownloadAssess
Crystal Structure Analysis of the E.coli holoenzyme Heteromer
MG;ZN;4lk15-612
Crystal structure of Escherichia coli RNA polymerase in complex with CBRP18 Heteromer
P0A7Z4; P0A8V2; P0A8T7; P0A800;
MG;ZN;4OE;4zh45-612
Crystal structure of Escherichia coli RNA polymerase in complex with CBRH16-Br Heteromer
P0A7Z4; P0A8V2; P0A8T7; P0A800;
MG;ZN;4OD;4zh35-612
Crystal structure of Escherichia coli RNA polymerase in complex with CBR703 Heteromer
P0A7Z4; P0A8V2; P0A8T7; P0A800;
4OB;MG;ZN;4zh25-612
Crystal Structure Analysis of the E.coli holoenzyme/Gp2 complex Heteromer
P03704;
MG;ZN;4llg6-612
'X-ray crystal structure of the Escherichia coli RNA polymerase in complex with Benzoxazinorifamy... Heteromer
P0A7Z4; P0A8V2; P0A8T7; P0A800;
MG;ZN;1RM;4kn76-609
X-ray crystal structure of the Escherichia coli RNA polymerase in complex with Rifampin Heteromer
P0A7Z4; P0A8V2; P0A8T7; P0A800;
ZN;RFP;MG;4kmu6-609
'X-ray crystal structure of Escherichia coli sigma70 holoenzyme in complex with Guanosine tetraph... Heteromer
P0A7Z4; P0A8V2; P0A8T7; P0A800;
G4P;ZN;4jk16-609
'X-ray crystal structure of the Escherichia coli RNA polymerase in complex with Benzoxazinorifamy... Heteromer
P0A7Z4; P0A8V2; P0A8T7; P0A800;
ZN;1RL;MG;4kn46-609
'X-ray crystal structure of Escherichia coli sigma70 holoenzyme in complex with guanosine pentaph... Heteromer
P0A7Z4; P0A8V2; P0A8T7; P0A800;
ZN;0O2;4jk26-609
E. coli Transcription Initiation Complex - 16-bp spacer and 5-nt RNA Heteromer
P0A7Z4; P0A8V2; P0A8T7; P0A800;
ZN;MG;4ylp79-613
E. coli Transcription Initiation Complex - 17-bp spacer and 4-nt RNA Heteromer
A7ZSI4; A7ZUK1; A7ZUK2; A7ZTK1;
ZN;MG;4yln79-613
E. coli Transcription Initiation Complex - 16-bp spacer and 4-nt RNA Heteromer
A7ZSI4; A7ZUK1; P0A8T7; A7ZTK1;
MG;ZN;4ylo79-613
The cryo-EM structure of a bacterial class I transcription activation complex Heteromer
P0A7Z6; B7MIX3; P0A8T8; B7MFL0; P0ACK0; P0A7Z6;
ZN;MG;CMP;6b6h79-613
Cryo-EM structure of E. coli RNAP sigma70 open complex Heteromer
P0A7Z4; P0A8V2; P0A8T7; P0A800;
MG;ZN;6ca090-612
Crystal Structure Analysis of the E.coli holoenzyme Heteromer
MG;ZN;4ljz92-612
Crystal structure of CBR 9393 bound to Escherichia coli RNA polymerase holoenzyme Heteromer
A7ZSI4; A7ZUK1; A7ZUK2; B1IYV1;
MG;42U;ZN;4xsz92-612
Crystal structure of CBR 703 bound to Escherichia coli RNA polymerase holoenzyme Heteromer
A7ZSI4; A7ZUK1; A7ZUK2; A8ARN6;
ZN;42S;MG;4xsx92-612
Crystal Structure Analysis of the E.coli holoenzyme/T7 Gp2 complex Heteromer
P03704;
MG;ZN;4lk092-612
Crystal structure of CBR 9379 bound to Escherichia coli RNA polymerase holoenzyme Heteromer
A7ZSI4; A7ZUK1; A7ZUK2; A8ARN6;
ZN;MG;42T;4xsy92-612
'Escherichia coli RNA polymerase sigma70-holoenzyme bound to upstream fork promoter DNA and Capis... Heteromer
P0A7Z4; P0A8V2; P0A8T7; P0A800;
ZN;MG;EPE;EDO;6n6194-613
Escherichia coli RNA polymerase sigma70-holoenzyme bound to upstream fork promoter DNA Heteromer
P0A7Z6; P0A8V4; P0A8T8; P0A802;
MG;ZN;6n6294-613
'Escherichia coli 6S RNA derivative in complex with Escherichia coli RNA polymerase sigma70-holoe... Heteromer
P0A7Z4; P0A8V2; P0A8T7; P0A800;
MG;ZN;5vt094-613
Escherichia coli RNA polymerase mutant - RpoB D516V Heteromer
P0A7Z4; P0A8V2; P0A8T7; P0A800;
MG;ZN;5uag94-612
Escherichia coli RNA polymerase in complex with squaramide compound 8. Heteromer
A7ZSI4; A7ZUK1; A7ZUK2; A7ZTK1;
4C6;MG;ZN;4yfk94-612
X-ray crystal structur of Escherichia coli RNA polymerase sigma70 holoenzyme Heteromer
P0A7Z6; P0A8V4; P0A8T8; P0A802;
MG;ZN;4yg294-612
Escherichia coli RNA polymerase and Rifampin complex, wild-type Heteromer
P0A7Z4; P0A8V2; P0A8T7; P0A800;
MG;RFP;ZN;5uac94-612
X-ray crystal structure of Escherichia coli RNA polymerase and TraR complex Heteromer
P0A7Z4; P0A8V2; P0A8T7; P0A800; P41065;
MG;ZN;5w1s94-612
Escherichia coli RNA polymerase in complex with squaramide compound 14 (N-[3,4-dioxo-2-(4-{[4-(tr... Heteromer
A7ZSI4; A7ZUK1; A7ZUK2; A7ZTK1;
MG;4C2;ZN;4yfn94-612
Escherichia coli RNA polymerase and Rifampin complex, RpoB S531L mutant Heteromer
P0A7Z4; P0A8V2; P0A8T7; P0A800;
MG;RFP;ZN;5ual94-612
Escherichia coli RNA polymerase RpoB S531L mutant Heteromer
P0A7Z4; P0A8V2; P0A8T7; P0A800;
MG;ZN;5uaj94-612
Escherichia coli RNA polymerase and Rifampin complex, RpoB D516V mutant Heteromer
P0A7Z4; P0A8V2; P0A8T7; P0A800;
MG;RFP;ZN;5uah94-612
Escherichia coli RpoB S531L mutant RNA polymerase holoenzyme in complex with Kanglemycin A Heteromer
P0A7Z4; P0A8V2; P0A8T7; P0A800;
KNG;MG;ZN;6cux94-612
Crystal Structure of E. coli RNA Polymerase in complex with ppGpp Heteromer
A0A0E0Y7A2;
G4P;SR;ZN;4jkr95-613
X-ray crystal structure of Escherichia coli RNA polymerase and DksA/ppGpp complex Heteromer
P0A7Z4; P0A8V2; P0A8T7; P0A800; P0ABS1;
G4P;MG;ZN;5vsw94-612
X-ray crystal structure of Escherichia coli RNA polymerase and DksA complex Heteromer
P0A7Z4; P0A8V2; P0A8T7; P0A800; P0ABS1;
MG;ZN;5w1t94-612
Cryo-EM structure of E. coli RNAP sigma70 holoenzyme Heteromer
P0A7Z4; P0A8V2; P0A8T7; P0A800;
MG;ZN;6c9y94-612
Escherichia coli RNA polymerase RpoB H526Y mutant Heteromer
P0A7Z4; P0A8V2; P0A8T7; P0A800;
MG;ZN;5uaq95-612
X-ray crystal structure of Escherichia coli RNA polymerase (RpoB-H526Y) and ppApp complex Heteromer
P0A7Z4; P0A8V2; P0A8T7; P0A800;
ZN;MG;ECJ;6byu95-612
Crystal structure of Escherichia coli RNA polymerase in complex with salinamide A Heteromer
P0A7Z4; P0A8V2; P0A8T7; P0A800;
MG;ZN;4mex95-612
Crystal structure of Escherichia coli RNA polymerase holoenzyme Heteromer
P0A7Z4; P0A8V2; P0A8T7; P0A800;
MG;ZN;4mey95-612
'Escherichia coli RNA polymerase sigma70-holoenzyme bound to upstream fork promoter DNA and Micro... Heteromer
P0A7Z4; P0A8V2; P0A8T7; P0A800; Q9X2V7;
MG;ZN;6n6094-610
Escherichia coli RNA polymerase in complex with Myxopyronin B Heteromer
A7ZSI4; A7ZUK1; A7ZUK2; A7ZTK1;
MG;ZN;4C4;4yfx95-609
'Three-dimensional EM structure of an intact activator-dependent transcription initiation complex' Heteromer
P0A7Z4; P0A8V2; P0A8T7; P0A800; P0ACJ8;
CMP;3iyd105-611
PhoB(E)-Sigma70(4)-(RNAP-Betha-flap-tip-helix)-DNA Transcription Activation Sub-Complex Heteromer
P0AFJ5;
3t72533-609
'Crystal structure of the Escherichia coli regulator of sigma 70, Rsd, in complex with sigma 70 d... Heteromer
Q0P6L9; P0AFX4;
MG;2p7v546-613
T4 AsiA bound to sigma70 region 4 Heteromer
P32267;
1tlh546-613
CRYSTAL STRUCTURE OF A SIGMA70 SUBUNIT FRAGMENT FROM ESCHERICHIA COLI RNA POLYMERASEmonomer 1sig114-446