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SMTL ID : 6xh8.1

CueR-transcription activation complex with RNA transcript

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-1-1-1-2-mer

Ligands

1 x GTP- A- G: NASCENT RNA(Non-covalent)

GTP-A-G.1:

22 residues within 4Å:

Chain C: R.529, P.564, E.565, N.568, M.685, Q.688, K.1065, K.1073, H.1237
Chain D: R.425, A.426, P.427, D.460, D.462, G.463, D.464, Q.465
Chain J: A.12, C.13, T.14, C.15, G.16

3 PLIP interactions:

3 interactions with chain C

Hydrogen bonds: C:R.529, C:N.568, C:N.568

2 x ZN: ZINC ION(Non-covalent)

ZN.2:	7 residues within 4Å: Chain D: C.70, L.71, C.72, C.85, C.88, G.89, V.90 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:C.85, D:C.88
ZN.3:	7 residues within 4Å: Chain D: C.814, T.816, R.883, C.888, D.889, C.895, C.898 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.814, D:C.888, D:C.895, D:C.898

2 x CU: COPPER (II) ION(Non-covalent)

CU.4:	7 residues within 4Å: Chain G: C.112, P.113, D.119, C.120, P.121, I.122 Chain H: S.77 2 PLIP interactions: 2 interactions with chain G Metal complexes: G:C.112, G:C.120
CU.5:	8 residues within 4Å: Chain G: S.77 Chain H: C.112, P.113, G.114, S.117, D.119, C.120, P.121 2 PLIP interactions: 2 interactions with chain H Metal complexes: H:C.112, H:C.120

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Shi, W. et al., Structural basis of copper-efflux-regulator-dependent transcription activation. Iscience (2021)

Release Date

2021-04-14

Peptides

DNA-directed RNA polymerase subunit alpha: AB
DNA-directed RNA polymerase subunit beta: C
DNA-directed RNA polymerase subunit beta': D
DNA-directed RNA polymerase subunit omega: E
RNA polymerase sigma factor RpoD: F
HTH-type transcriptional regulator CueR: GH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

DNA-directed RNA polymerase subunit alpha

DNA-directed RNA polymerase subunit beta

DNA-directed RNA polymerase subunit beta'

DNA-directed RNA polymerase subunit omega

RNA polymerase sigma factor RpoD

HTH-type transcriptional regulator CueR

Toggle Identical (GH)

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