SMTL ID : 8ad1.1

RNA polymerase at U-rich pause bound to RNA putL triple mutant - pause prone, closed clamp state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-2-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain B: G.93 Chain I: D.460, D.462, D.464 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:D.460, I:D.462, I:D.462

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain I: C.72, K.74, C.85, K.87, C.88 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:C.72, I:C.85, I:C.88 ZN.3: 4 residues within 4Å: Chain I: C.814, C.888, C.895, C.898 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.814, I:C.888, I:C.895, I:C.898

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dey, S. et al., Structural insights into RNA-mediated transcription regulation in bacteria. Mol.Cell (2022)

Release Date

2022-10-19

Peptides

DNA-directed RNA polymerase subunit omega: D
RNA polymerase sigma factor RpoD: E
DNA-directed RNA polymerase subunit alpha: FG
DNA-directed RNA polymerase subunit beta: H
DNA-directed RNA polymerase subunit beta': I

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

D
E

E
F

F
A

G
B

H
C

I
D

DNA-directed RNA polymerase subunit omega

RNA polymerase sigma factor RpoD

DNA-directed RNA polymerase subunit alpha

DNA-directed RNA polymerase subunit beta

DNA-directed RNA polymerase subunit beta'

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