SMTL ID : 3iyd.1

Three-dimensional EM structure of an intact activator-dependent transcription initiation complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-1-1-1-2-mer

Ligands

2 x CMP: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE(Non-covalent)

CMP.1: 17 residues within 4Å: Chain G: I.30, V.49, L.61, L.64, G.71, E.72, L.73, G.74, E.81, R.82, S.83, A.84, V.86, R.123, T.127 Chain H: Q.125, S.128 10 PLIP interactions: 7 interactions with chain G, 3 interactions with chain H Hydrogen bonds: G:G.71, G:E.72, G:E.72, G:L.73, G:G.74, G:S.83, H:Q.125, H:S.128, H:S.128 Salt bridges: G:R.82 CMP.2: 15 residues within 4Å: Chain G: S.128 Chain H: I.30, V.49, L.61, S.62, L.64, G.71, E.72, L.73, E.81, R.82, S.83, A.84, V.86, R.123 9 PLIP interactions: 7 interactions with chain H, 2 interactions with chain G Hydrogen bonds: H:S.62, H:G.71, H:E.72, H:L.73, H:S.83, H:R.123, G:S.128, G:S.128 Salt bridges: H:R.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hudson, B.P. et al., Three-dimensional EM structure of an intact activator-dependent transcription initiation complex. Proc.Natl.Acad.Sci.USA (2009)

Release Date

2009-11-10

Peptides

DNA-directed RNA polymerase subunit alpha: AB
DNA-directed RNA polymerase subunit beta: C
DNA-directed RNA polymerase subunit beta: D
DNA-directed RNA polymerase subunit omega: E
RNA polymerase sigma factor rpoD: F
Catabolite gene activator: GH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

DNA-directed RNA polymerase subunit alpha

DNA-directed RNA polymerase subunit beta

DNA-directed RNA polymerase subunit beta

DNA-directed RNA polymerase subunit omega

RNA polymerase sigma factor rpoD

Catabolite gene activator

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