Q0P6L9 | SWISS-MODEL Repository

Q0P6L9 (Q0P6L9_ECOLX) Escherichia coli

RNA polymerase sigma factor RpoD UniProtKB InterPro Interactive Modelling

613 aa; Sequence (Fasta) ; 1 identical sequence: Escherichia coli: P00579

It is possible new templates exist for this target since these models were created.

Available Structures

114 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Crystal Structure Analysis of the E.coli holoenzyme	4lk1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579;	5-612	100.0	1×MG; 2×ZN;
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Crystal structure of Escherichia coli RNA polymerase in complex with CBRP18	4zh4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	5-612	100.0	1×4OE; 1×MG; 2×ZN;
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Crystal structure of Escherichia coli RNA polymerase in complex with CBRH16-Br	4zh3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	5-612	100.0	1×MG; 2×ZN; 1×4OD;
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Crystal structure of Escherichia coli RNA polymerase in complex with CBR703	4zh2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	5-612	100.0	1×4OB; 1×MG; 2×ZN;
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Crystal Structure Analysis of the E.coli holoenzyme/Gp2 complex	4llg PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P03704;	6-612	100.0	1×MG; 2×ZN;
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Escherichia coli RNA polymerase and rrnBP1 promoter complex with DksA/ppGpp	7khi PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P0ABS1;	6-612	100.0	4×1N7; 1×MG; 3×ZN; 2×G4P;
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Escherichia coli RNA polymerase promoter unwinding intermediate (TRPi1) with TraR and rpsT P2 promo…	6psr PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P41065;	7-613	100.0	4×1N7; 1×MG; 3×ZN;
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Escherichia coli RNA polymerase closed complex intermediate at the lambda PR promoter	8tom PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	7-613	100.0	4×1N7; 1×MG; 2×ZN;
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Escherichia coli RNA polymerase closed complex (TRPc) with TraR and rpsT P2 promoter	6psq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P41065;	7-613	100.0	1×MG; 3×ZN; 4×1N7;
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Escherichia coli RNA polymerase promoter unwinding intermediate (TRPi1.5a) with TraR and mutant rps…	6pss PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P41065;	7-613	100.0	1×MG; 3×ZN;
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Escherichia coli RNA polymerase promoter unwinding intermediate (TRPi2) with TraR and rpsT P2 promo…	6psu PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P41065;	7-613	100.0	3×ZN; 4×1N7; 1×MG;
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Escherichia coli RNA polymerase promoter unwinding intermediate (TRPi1.5b) with TraR and mutant rps…	6pst PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P41065;	7-613	100.0	3×ZN; 4×1N7; 1×MG;
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Escherichia coli RNA polymerase unwinding intermediate (I1a) at the lambda PR promoter	8to1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	7-613	100.0	4×4QM; 1×MG; 2×ZN;
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Cryo-EM structure of Escherichia coli RNAP polymerase bound with TraR in conformation I	6n57 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P41065;	7-613	100.0	4×1N7; 3×ZN; 1×MG;
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Cryo-EM structure of Escherichia coli sigma70 bound RNAP polymerase holoenzyme	6p1k PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	7-613	100.0	1×MG; 2×ZN;
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Cryo-EM structure of Escherichia coli RNAP polymerase bound with TraR in conformation II	6n58 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P41065;	7-613	100.0	4×1N7; 1×MG; 3×ZN;
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EM structure of the DNA wrapping in bacterial open transcription initiation complex	6n4c PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	8-613	100
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Escherichia coli RNA polymerase unwinding intermediate (I1b) at the lambda PR promoter	8to8 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	7-612	100.0	4×4QM; 1×MG; 2×ZN;
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X-ray crystal structure of the Escherichia coli RNA polymerase in complex with Benzoxazinorifamycin…	4kn7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	6-609	100.0	1×1RM; 2×ZN; 1×MG;
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X-ray crystal structure of the Escherichia coli RNA polymerase in complex with Rifampin	4kmu PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	6-609	100.0	1×RFP; 2×ZN; 1×MG;
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X-ray crystal structure of Escherichia coli sigma70 holoenzyme in complex with Guanosine tetraphosp…	4jk1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	6-609	100.0	2×ZN; 1×G4P;
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X-ray crystal structure of the Escherichia coli RNA polymerase in complex with Benzoxazinorifamycin…	4kn4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	6-609	100.0	1×1RL; 2×ZN; 1×MG;
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X-ray crystal structure of Escherichia coli sigma70 holoenzyme in complex with guanosine pentaphosp…	4jk2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	6-609	100.0	2×ZN; 1×0O2;
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Escherichia coli RNA polymerase unwinding intermediate (I1c) at the lambda PR promoter	8toe PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	68-612	100.0	3×1N7; 1×MG; 2×ZN;
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E. coli Transcription Initiation Complex - 16-bp spacer and 5-nt RNA	4ylp PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	79-613	100.0	2×ZN; 1×MG;
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E. coli Transcription Initiation Complex - 17-bp spacer and 4-nt RNA	4yln PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A7ZSI4; A7ZTK1; A7ZUK1; A7ZUK2; P00579;	79-613	100.0	2×ZN; 1×MG;
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E. coli Transcription Initiation Complex - 16-bp spacer and 4-nt RNA	4ylo PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A7ZSI4; A7ZTK1; A7ZUK1; P00579; P0A8T7;	79-613	100.0	1×MG; 2×ZN;
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Structures of class I bacterial transcription complexes	7beg PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; Q48413;	79-613	100.0
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CueR-TAC without RNA	6xh7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P0A9G4;	79-613	100.0	2×ZN; 2×CU;
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Structures of class II bacterial transcription complexes	7bef PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; Q48413;	79-613	100.0
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Structural basis of transcriptional activation by the OmpR/PhoB-family response regulator PmrA	8jo2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A0R4I965; P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	79-613	100.0
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CueR-transcription activation complex with RNA transcript	6xh8 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P0A9G4;	79-613	100.0	2×ZN; 2×CU;
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Cryo-EM structure of SoxS-dependent transcription activation complex with zwf promoter DNA	7w5x PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P0A9E2;	79-613	100.0
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Cryo-EM structure of SoxS-dependent transcription activation complex with fpr promoter DNA	7w5y PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P0A9E2;	79-613	100.0
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The cryo-EM structure of a bacterial class I transcription activation complex	6b6h PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P0ACJ8;	79-613	100.0	2×ZN; 1×MG; 2×CMP;
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Cryo-EM structure of E.coli transcription initiation complex with transcription factor GcvA	8y6u PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P0A9F6;	79-613	100.0
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Cryo-EM structure of Escherichia coli RNA polymerase bound to lambda PR promoter DNA (class 1)	7mkd PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	85-611	100.0	3×1N7; 1×MG; 2×ZN;
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Cryo-EM structure of E. coli RNAP-promoter initial transcribing complex with 5-nt RNA transcript (R…	6xll PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	89-613	100.0	2×1N7; 1×MG; 2×ZN;
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Cryo-EM structure of EcmrR-RNAP-promoter open complex (EcmrR-RPo)	6xl5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	89-613	100.0	5×1N7; 1×MG; 2×ZN; 2×118;
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Cryo-EM structure of EcmrR-RNAP-promoter initial transcribing complex with 4-nt RNA transcript (Ecm…	6xlj PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	89-613	100.0	5×1N7; 3×118; 2×MG; 2×ZN;
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Cryo-EM structure of E. coli NarL-transcription activation complex at 3.2A	8u3b PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P0AF28;	90-613	100.0	2×ZN; 1×MG;
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Escherichia coli RNA polymerase promoter unwinding intermediate (TRPo) with TraR and rpsT P2 promot…	6psw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P41065;	90-613	100.0	2×1N7; 1×MG; 3×ZN;
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Structure of Escherichia coli CedA in complex with transcription initiation complex	8ftd PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P0AE60;	90-613	100.0	3×1N7; 1×MG; 2×ZN;
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Cryo-EM structure of Escherichia coli RNAP polymerase bound to rpsTP2 promoter DNA	6oul PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8V2;	90-613	100.0	3×1N7; 1×MG; 2×ZN;
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Cryo-EM structure of an Escherichia coli RNAP-promoter open complex (RPo) with SspA	7c97 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P0ACA3;	90-612	100.0	1×MG; 2×ZN;
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Cryo-EM structure of an Escherichia coli RNAP-promoter open complex (RPo)	7chw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	90-612	100.0	1×MG; 2×ZN;
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Cryo-EM structure of E. coli RNAP sigma70 open complex	6ca0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	90-612	100.0	1×MG; 2×ZN;
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A refined cryo-EM structure of an Escherichia coli RNAP-promoter open complex (RPo) with SspA	7dy6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P0ACA3;	90-612	100.0	1×MG; 2×ZN;
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Escherichia coli RNA polymerase promoter unwinding intermediate (TpreRPo) with TraR and rpsT P2 pro…	6psv PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P41065;	91-613	100.0	3×ZN; 4×1N7; 1×MG;
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The cryo-EM map of TIC-TIEA complex	8k59 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P07879; P0A7Z4; P0A800; P0A8T7; P0A8V2;	90-612	100.0
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Cryo-EM structure of Escherichia coli RNA polymerase bound to T7A1 promoter DNA	7mkj PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	90-611	100.0	3×1N7; 1×MG; 2×ZN;
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Escherichia coli RNA polymerase and rrnBP1 promoter open complex	7khb PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	91-612	100.0	2×1N7; 1×MG; 2×ZN;
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Cryo-EM structure of Escherichia coli RNA polymerase bound to lambda PR (-5G to C) promoter DNA	7mki PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	90-611	100.0	3×1N7; 1×MG; 2×ZN;
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E. coli RNAPs70-SspA-gadA DNA complex	6wmu PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P0ACA3;	91-612	100.0	1×MG; 2×ZN;
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Cryo-EM structure of 27a bound to E. coli RNAP and rrnBP1 promoter complex	7szk PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	91-612	100.0	1×D9X; 1×MG; 2×ZN;
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Cryo-EM structure of Rifamycin bound to E. coli RNAP and rrnBP1 promoter complex	7szj PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	91-612	100.0	1×RFP; 1×MG; 2×ZN;
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CryoEM structure of sigma appropriation complex	6k4y PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P22915; P32267;	90-611	100.0	1×MG; 2×ZN;
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Escherichia coli RNA polymerase and rrnBP1 promoter pre-open complex with DksA/ppGpp	7khe PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P0ABS1;	91-612	100.0	4×1N7; 1×MG; 3×ZN; 2×G4P;
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Cryo-EM structure of EcmrR-RNAP-promoter initial transcribing complex with 3-nt RNA transcript (Ecm…	6xl9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A8T7; P0A8V2;	92-613	100.0	2×ZN; 2×MG; 3×118;
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Crystal Structure Analysis of the E.coli holoenzyme	4ljz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579;	92-612	100.0	1×MG; 2×ZN;
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Crystal structure of CBR 9393 bound to Escherichia coli RNA polymerase holoenzyme	4xsz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A7ZSI4; A7ZUK1; A7ZUK2; B1IYV1; P00579;	92-612	100.0	1×42U; 1×MG; 2×ZN;
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Crystal structure of CBR 703 bound to Escherichia coli RNA polymerase holoenzyme	4xsx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A7ZSI4; A7ZUK1; A7ZUK2; A8ARN6; P00579;	92-612	100.0	1×42S; 1×MG; 2×ZN;
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Crystal Structure Analysis of the E.coli holoenzyme/T7 Gp2 complex	4lk0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P03704;	92-612	100.0	1×MG; 2×ZN;
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Crystal structure of CBR 9379 bound to Escherichia coli RNA polymerase holoenzyme	4xsy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A7ZSI4; A7ZUK1; A7ZUK2; A8ARN6; P00579;	92-612	100.0	1×42T; 1×MG; 2×ZN;
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Cryo-EM structure of Escherichia coli RNA polymerase bound to lambda PR promoter DNA (class 2)	7mke PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	91-611	100.0	4×1N7; 1×MG; 2×ZN;
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The E. coli class-II CAP-dependent transcription activation complex with de novo RNA transcript at …	6pb4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P0ACJ8;	93-613	100.0	2×ZN; 1×MG; 2×CMP;
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Cryo-EM structure of Rob-dependent transcription activation complex in a unique conformation	7vwy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P0ACI0;	93-613	100.0	2×ZN; 1×MG;
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The E. coli class-II CAP-dependent transcription activation complex at the state 2	6pb6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P0ACJ8;	93-613	100.0	2×ZN; 1×MG; 2×CMP;
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Cryo-EM structure of SoxS-dependent transcription activation complex with micF promoter DNA	7w5w PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P0A9E2;	93-613	100.0	2×ZN; 1×MG;
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Cryo-EM structure of Rob-dependent transcription activation complex in a unique conformation	7vwz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P0ACI0;	93-613	100.0	2×ZN; 1×MG;
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Escherichia coli RNA polymerase sigma70-holoenzyme bound to upstream fork promoter DNA and Capistru…	6n61 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2;	94-613	100.0	1×EDO; 1×MG; 2×ZN; 1×EPE;
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Escherichia coli RNA polymerase sigma70-holoenzyme bound to upstream fork promoter DNA	6n62 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	94-613	99.79	1×MG; 2×ZN;
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The E. coli class-II CAP-dependent transcription activation complex at the state 1 architecture	6pb5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P0ACJ8;	94-613	100.0	2×ZN; 1×MG; 2×CMP;
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The cryo-EM structure of E. coli CueR transcription activation complex	6ldi PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P0A9G4;	93-612	100.0	2×ZN; 1×MG; 1×AG;
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Cryo-EM structure of RNAP-promoter open complex at lambda promoter PRE	8igs PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	92-611	100.0	1×MG; 2×ZN;
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The cryo-EM structure of E. coli CueR transcription activation complex with fully duplex promoter D…	7c17 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P0A9G4;	93-612	100.0	2×ZN; 1×MG; 1×AG;
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Cryo-EM structure of CII-dependent transcription activation complex	8igr PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P03042; P0A7Z4; P0A800; P0A8T7; P0A8V2;	92-611	100.0	1×MG; 2×ZN;
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Escherichia coli 6S RNA derivative in complex with Escherichia coli RNA polymerase sigma70-holoenzy…	5vt0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	94-613	100.0	1×MG; 2×ZN;
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Escherichia coli RNA polymerase mutant - RpoB D516V	5uag PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	94-612	100.0	2×MG; 2×ZN;
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Escherichia coli RNA polymerase in complex with squaramide compound 8.	4yfk PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A7ZSI4; A7ZTK1; A7ZUK1; A7ZUK2; P00579;	94-612	100.0	2×MG; 2×ZN; 1×4C6;
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X-ray crystal structur of Escherichia coli RNA polymerase sigma70 holoenzyme	4yg2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z6; P0A802; P0A8T8; P0A8V4;	94-612	100.0	2×MG; 2×ZN;
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Escherichia coli RNA polymerase and Rifampin complex, wild-type	5uac PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	94-612	100.0	1×RFP; 1×MG; 2×ZN;
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X-ray crystal structure of Escherichia coli RNA polymerase and TraR complex	5w1s PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P41065;	94-612	100.0	1×MG; 3×ZN;
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Escherichia coli RNA polymerase in complex with squaramide compound 14 (N-[3,4-dioxo-2-(4-{[4-(trif…	4yfn PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A7ZSI4; A7ZTK1; A7ZUK1; A7ZUK2; P00579;	94-612	100.0	1×MG; 2×ZN; 1×4C2;
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Escherichia coli RNA polymerase and Rifampin complex, RpoB S531L mutant	5ual PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	94-612	100.0	1×RFP; 1×MG; 2×ZN;
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Escherichia coli RNA polymerase RpoB S531L mutant	5uaj PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	94-612	100.0	1×MG; 2×ZN;
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Escherichia coli RNA polymerase and Rifampin complex, RpoB D516V mutant	5uah PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	94-612	100.0	1×RFP; 2×MG; 2×ZN;
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Escherichia coli RpoB S531L mutant RNA polymerase holoenzyme in complex with Kanglemycin A	6cux PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	94-612	100.0	1×KNG; 1×MG; 2×ZN;
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Crystal Structure of E. coli RNA Polymerase in complex with ppGpp	4jkr PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A0E0Y7A2; P00579;	95-613	100.0	6×SR; 1×G4P; 2×ZN;
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X-ray crystal structure of Escherichia coli RNA polymerase and DksA/ppGpp complex	5vsw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P0ABS1;	94-612	100.0	1×MG; 3×ZN; 2×G4P;
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X-ray crystal structure of Escherichia coli RNA polymerase and DksA complex	5w1t PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P0ABS1;	94-612	100.0	1×MG; 3×ZN;
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Cryo-EM structure of E. coli RNAP sigma70 holoenzyme	6c9y PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	94-612	100.0	1×MG; 2×ZN;
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Escherichia coli RNA polymerase unwinding intermediate (I1d) at the lambda PR promoter	8to6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	94-612	100.0	3×4QM; 1×MG; 2×ZN;
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X-ray crystal structure of Escherichia coli RNA polymerase (RpoB-H526Y) and ppApp complex	6byu PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	95-612	100.0	1×ECJ; 1×MG; 2×ZN;
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Escherichia coli RNA polymerase RpoB H526Y mutant	5uaq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	95-612	100.0	1×MG; 2×ZN;
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Crystal structure of Escherichia coli RNA polymerase in complex with salinamide A	4mex PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	95-612	100.0	1×MG; 2×ZN;
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Crystal structure of Escherichia coli RNA polymerase holoenzyme	4mey PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	95-612	100.0	1×MG; 2×ZN;
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Escherichia coli RNA polymerase sigma70-holoenzyme bound to upstream fork promoter DNA and Microcin…	6n60 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P0A7Z4; P0A800; P0A8T7; P0A8V2; Q9X2V7;	94-610	100.0	1×MG; 2×ZN;
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Escherichia coli RNA polymerase in complex with Myxopyronin B	4yfx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A7ZSI4; A7ZTK1; A7ZUK1; A7ZUK2; P00579;	95-609	100.0	1×MG; 2×ZN; 1×4C4;
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Escherichia coli RNA polymerase and ureidothiophene-2-carboxylic acid complex	6vjs PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	95-609	100.0	1×QZY; 2×ZN; 1×MG;
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Transcription antitermination complex: "pre-engaged" Qlambda-loading complex	7ubm PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P03047; P0A7Z4; P0A800; P0A8T7; P0A8V2;	90-599	100.0	3×ZN; 1×MG;
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Transcription antitermination complex: NusA-containing "engaged" Qlambda-loading complex	7ubn PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P03047; P0A7Z4; P0A800; P0A8T7; P0A8V2; P0AFF6;	90-599	100.0	3×ZN; 1×MG;
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Three-dimensional EM structure of an intact activator-dependent transcription initiation complex	3iyd PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; P0ACJ8;	105-611	99.58	2×CMP;
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Escherichia coli RNA polymerase and rrnBP1 promoter closed complex	7khc PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	115-612	100.0	1×POP; 2×1N7; 1×MG; 2×ZN;
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Escherichia coli sigma 70-dependent paused transcription elongation complex	7n4e PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	90-501	100.0	2×ZN; 1×MG;
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Q21 transcription antitermination complex: loading complex	6p18 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2; Q9XJQ6;	90-467	100.0	2×ZN; 1×MG;
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Cryo-EM structure of a Q-engaged arrested complex	6jnx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer M1FPN0; P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	90-447	100.0	1×MG; 2×ZN;
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Cryo-EM structure of sigma70 bound HK022 putRNA-associated E.coli RNA polymerase elongation complex	7xui PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	112-447	100.0	2×ZN; 1×MG;
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Cryo-EM structure of E.coli RNAP-DNA elongation complex 1 (RDe1) in EcmrR-dependent transcription	6xlm PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	113-446	100.0	2×1N7; 1×MG; 2×ZN;
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RNA polymerase at U-rich pause bound to RNA putL triple mutant - pause prone, closed clamp state	8ad1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A7Z4; P0A800; P0A8T7; P0A8V2;	118-445	100.0	1×MG; 2×ZN;
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PhoB(E)-Sigma70(4)-(RNAP-Betha-flap-tip-helix)-DNA Transcription Activation Sub-Complex	3t72 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P0A8V2; P0AFJ5;	533-609	100
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Crystal structure of the Escherichia coli regulator of sigma 70, Rsd, in complex with sigma 70 doma…	2p7v PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P0AFX4;	546-613	100	1×MG;
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T4 AsiA bound to sigma70 region 4	1tlh PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P00579; P32267;	546-613	100
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CRYSTAL STRUCTURE OF A SIGMA70 SUBUNIT FRAGMENT FROM ESCHERICHIA COLI RNA POLYMERASE	1sig PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	114-446	99.67
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4 SWISS-MODEL models

Template	Oligo-state	QMEANDisCo	Range	Trg-Tpl Seq id (%)
6cce.1.G	monomer	0.73	340-612	55.31
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4zh4.2.F	monomer	0.70	7-613	100.00
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8q3i.1.F	monomer	0.69	340-502	55.31
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3lev.2.A	monomer	0.53	340-446	66.67
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

Q0P6L9 (Q0P6L9_ECOLX) Escherichia coli

RNA polymerase sigma factor RpoD UniProtKBInterProInteractive Modelling

Available Structures

114 Experimental Structures

4 SWISS-MODEL models

Alignments

Background

Resolution

RNA polymerase sigma factor RpoD UniProtKB InterPro Interactive Modelling