P14618 | SWISS-MODEL Repository

P14618 (KPYM_HUMAN) Homo sapiens (Human)

Pyruvate kinase PKM UniProtKB InterPro STRING Interactive Modelling

531 aa; Sequence (Fasta) ; (Isoform 2; Isoform 3); 5 identical sequences: Homo sapiens: V9HWB8; Pan troglodytes: H2Q9R1, A0A6D2XQL7; Pan paniscus: A0A2R9C418; Gorilla gorilla gorilla: A0A2I2YRU7

Available Structures

56 Experimental Structures

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Crystal structure of M2 PYK in complex with Alanine.	6gg3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	5-531	100	4×PO4; 3×ALA;
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Crystal structure of human pyruvate kinase M2 isoform	6jfb PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	6-531	100.0	4×SER; 3×PO4;
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Activator-Bound Structure of Human Pyruvate Kinase M2	3gr4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	13-531	100	4×FBP; 7×TLA; 2×DYY; 18×UNX; 1×ADP;
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PKM2 bound to compound 2	8g2e PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	13-531	100	4×YII; 12×EDO; 4×OXL; 40×SO4; 4×MG; 4×NA;
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Pyruvate Kinase M2 Mutant-K433Q	6wp3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	13-531	99.8	14×GOL; 4×OXL; 4×MG; 4×NO3; 2×K; 2×CL;
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Activator-Bound Structure of Human Pyruvate Kinase M2	3u2z PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	13-531	100	4×FBP; 21×UNX; 2×07T;
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Crystal Structure of PKM2 mutant C474S	8hms PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	13-531	99.81	3×FBP; 4×OXL; 7×EDO; 5×MG; 3×GOL;
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Pyruvate Kinase M2 mutant-N70D	7l21 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	13-531	99.8	4×OXL; 4×MG; 11×GOL; 4×FBP;
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Crystal Structure of Human PKM2 in Complex with L-asparagine	6v74 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	13-531	100.0	4×K; 17×GOL; 4×OXL; 4×FBP; 4×MG; 2×CL; 1×ASN; 1×144;
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2-((1H-benzo[d]imidazol-1-yl)methyl)-4H-pyrido[1,2-a]pyrimidin-4-ones as Novel PKM2 Activators	4jpg PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	13-531	100	4×FBP; 2×1OX;
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Crystal Structure of PKM2 mutant P403A	8hmq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	13-531	99.79	4×OXL; 7×GOL; 5×EDO; 9×MG; 3×FBP;
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Crystal Structure of PKM2 mutant R516C	8hmu PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	13-531	99.78	5×FBP; 5×OXL; 7×EDO; 2×GOL; 10×PO4; 7×MG;
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Human Pyruvate Kinase M2	1t5a PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	13-531	99.81	4×FBP; 4×OXL; 4×PO4; 4×MG; 4×K; 20×GOL;
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Human M2 pyruvate kinase in complex with fructose 1-6 bisphosphate and Oxalate.	3srd PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	13-531	100.0	4×OXL; 4×FBP; 3×K; 4×MG; 5×GOL;
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Activator-Bound Structure of Human Pyruvate Kinase M2	3gqy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	14-531	100.0	4×FBP; 6×TLA; 9×UNX; 2×DZG;
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Activator-Bound Structure of Human Pyruvate Kinase M2	3me3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	14-531	100	2×3SZ; 4×FBP; 4×SO4; 42×UNX;
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S437Y Mutant of human muscle pyruvate kinase, isoform M2	3g2g PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	14-531	99.78	13×SO4; 31×UNX;
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Activator-Bound Structure of Human Pyruvate Kinase M2	3h6o PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	14-531	100.0	4×FBP; 31×UNX; 2×D8G;
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Pyruvate kinase M2 is a phosphotyrosine binding protein	3bjf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	14-531	99.81	4×FBP; 4×OXL; 4×K; 4×MG;
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PKM2 in complex with compound 2	5x1v PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	14-531	100.0	4×FBP; 4×7XX;
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Crystal Structure of Human PKM2 in Complex with L-cysteine	6nu1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	14-531	100.0	4×CYS; 4×FBP; 4×MG; 4×OXL; 2×K;
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PKM2 in complex with an activator	4g1n PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	14-531	100	4×OXL; 4×MG; 2×NZT;
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human PKM2 with L-serine and FBP bound.	4b2d PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	14-531	100	4×SER; 4×FBP; 2×MG;
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Crystal structure of PKM2 mutant	4yj5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	14-531	99.81	4×PYR; 4×MG; 4×SER; 3×FBP;
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Pyruvate kinase M2 is a phosphotyrosine binding protein	3bjt PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	14-531	99.81	4×OXL; 4×MG;
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Human M2 pyruvate kinase	3srh PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	14-531	100	3×PO4;
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Crystal structure of PKM2 R399E mutant complexed with FBP and serine	5x0i PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	14-531	99.81	4×FBP; 4×SER; 4×PYR; 4×MG; 4×K;
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Human M1 pyruvate kinase	3srf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	14-531	95.72	4×PO4; 4×K; 4×MG; 4×PYR; 6×GOL;
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Crystal Structure of Human PKM2 in Complex with L-aspartate	6v75 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	14-531	100	6×K; 12×GOL; 1×CL; 4×FBP; 4×MG; 1×OXL; 2×ASP; 3×PEG;
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Human Pyruvate Kinase M2 Mutant C424A	4wj8 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	14-531	99.81	4×OXD; 2×FBP; 4×K; 4×MG; 5×GOL; 3×PO4; 2×SO4;
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PKM2 in complex with compound 5	5x1w PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	14-531	100	4×FBP; 2×7Y0;
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Crystal Structure of PKM2 mutant L144P	8hmr PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	15-531	99.81	4×OXL; 4×FBP; 4×MG; 2×EDO;
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Crystal Structure of Human PKM2 in Complex with L-valine	6v76 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	15-531	100.0	2×CL; 1×K; 2×MG; 4×FBP; 12×GOL; 2×OXL; 2×VAL;
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PKM2 in complex with Compound 5	6ttf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	18-531	100	4×LZ2; 4×FBP;
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PKM2 in complex with Compound 6	6tti PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	19-531	100.0	4×NXE; 4×FBP; 4×DMS;
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Pyruvate Kinase M2 mutant-S37E	6wp4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	21-531	99.8	11×PO4; 4×MG; 5×K; 2×OXL; 18×GOL; 2×CL;
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Pyruvate Kinase M2 mutant-S37D	6wp5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	21-531	99.8	4×K; 9×GOL; 3×MG; 4×OXL; 3×FBP;
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Pyruvate kinase M2 (PKM2) mutant in complex with phenylalanine	8x4r PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	22-531	99.41	4×K; 3×PHE;
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Crystal structure of M2 PYK in complex with Serine.	6gg6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	22-531	100	4×K; 4×MG; 4×SER; 4×PO4;
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PKM2 in complex with L-threonine	6tth PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	22-531	100.0	4×FBP; 4×THR;
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PKM2 in complex with Compound 10	6ttq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	22-531	100	4×NXH; 4×FBP;
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Crystal structure of M2 PYK in complex with Phenyalanine.	6gg4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	23-531	100	8×PO4; 4×PHE; 4×K;
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crystal structure of PKM2-K422R mutant bound with FBP	4rpp PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	23-531	99.76	4×FBP;
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Structure of M2 pyruvate kinase in complex with phenylalanine	4fxj PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	23-531	99.8	5×PO4; 4×PHE;
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Crystal structure of M2 PYK in complex with Tryptophan.	6gg5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	23-531	100	8×PO4; 4×TRP; 4×K;
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crystal structure of PKM2-K422R mutant	4qgc PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	24-531	99.8	4×K; 9×SO4; 4×GOL;
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crystal structure of PKM2-K305Q mutant	4qg8 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	24-531	99.8	3×MG; 3×K; 1×GOL; 3×MLI;
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crystal structure of PKM2-R399E mutant	4qg9 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	24-531	99.8	3×MG; 4×ACT;
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Pyruvate Kinase M2 mutant-S37E K433E	6wp6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	24-531	99.6	2×NO3; 4×MG; 2×OXL; 6×GOL;
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Human PKM2 mutant - C326S	8hgf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	24-531	99.8
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crystal structure of PKM2-Y105E mutant	4qg6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	24-531	99.75	4×PRO;
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Structure of human muscle pyruvate kinase (PKM2)	1zjh PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	25-531	100
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Structure of M2 pyruvate kinase in complex with phenylalanine	4fxf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-4-mer	26-531	99.8	4×OXL; 4×K; 6×MG; 4×FBP; 2×ATP;
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Pyruvate Kinase M2 mutant - S437Y	6b6u PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	7-531	99.81	2×MG; 2×OXL; 2×K; 2×CL; 6×SCN; 1×PEG; 2×B3P; 1×PG4; 1×EDO;
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Pyruvate Kinase M2 Mutant - S437Y in Complex with L-cysteine	6nu5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	7-531	99.81	2×CYS; 2×OXL; 2×SCN; 2×B3P; 2×MG; 2×K; 2×EDO;
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Pyruvate Kinase M2 Mutant - S437Y in Complex with L-serine	6nub PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	7-531	99.81	2×SER; 2×MG; 2×OXL; 2×K; 5×SCN; 1×PEG; 2×B3P; 1×PG4; 1×EDO;
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1 SWISS-MODEL model

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	4jpg.1.A	homo-4-mer	0.88	13-531	4×FBP; 2×1OX;	100.00
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

2 SWISS-MODEL models built on isoform sequence

Isoform	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
Isoform 2	8f6m.1.A	homo-4-mer	0.87	10-531	2×ADP; 5×SIN; 1×MN; 4×K; 4×ALA; 3×GZ3;	97.18
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Isoform 3	6wp4.1.A	homo-4-mer	0.86	32-516	1×OXL;	93.81
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P14618 (KPYM_HUMAN) Homo sapiens (Human)

Pyruvate kinase PKM UniProtKBInterProSTRINGInteractive Modelling

Available Structures

56 Experimental Structures

1 SWISS-MODEL model

2 SWISS-MODEL models built on isoform sequence

Alignments

Background

Resolution

Pyruvate kinase PKM UniProtKB InterPro STRING Interactive Modelling