P27958 | SWISS-MODEL Repository

P27958 (POLG_HCV77) Hepatitis C virus genotype 1a (isolate H77) (HCV)

Genome polyprotein UniProtKB InterPro Interactive Modelling

It is possible new templates exist for this target since these models were created.

Available Structures

Mature core protein 2-177; PRO_0000037567

	Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
	SOLUTION STRUCTURE OF THE HEPATITIS C VIRUS N-TERMINAL CAPSID PROTEIN 2-45 [C-HCV(2-45)]	1cwx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	2-45	100
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Core protein precursor 2-191; PRO_0000037566

	Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
	SOLUTION STRUCTURE OF THE HEPATITIS C VIRUS N-TERMINAL CAPSID PROTEIN 2-45 [C-HCV(2-45)]	1cwx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	2-45	100
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Envelope glycoprotein E1 192-383; PRO_0000037569

	Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
	Structure of the Hepatitis C Envelope Glycoprotein E1 antigenic region 314-324 bound to the cross-n…	4n0y PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	314-324	90.91	7×GOL; 1×CL;
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Envelope glycoprotein E2 384-746; PRO_0000037570

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Structure of Hepatitis C Virus Envelope Glycoprotein E2 core from genotype 1a bound to neutralizing…	6woq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	420-645	100.0	3×NAG; 1×NAG;
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Structure of Hepatitis C Virus Envelope Glycoprotein E2mc3-v1 redesigned core from genotype 1a boun…	6uyd PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	421-645	100.0	1×NAG; 3×NAG;
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Structure of Hepatitis C Virus Envelope Glycoprotein E2 core from genotype 1a bound to neutralizing…	6wo5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	421-645	100.0	1×NAG; 2×NAG; 1×BMA; 2×NAG;
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Structure of Hepatitis C Virus Envelope Glycoprotein E2 core bound to broadly neutralizing antibody…	4mwf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	421-645	96.88	1×NAG; 4×NAG;
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STRUCTURE OF THE HEPATITIS C VIRUS ENVELOPE GLYCOPROTEIN E2 ANTIGENIC 2 REGION 412-423 BOUND TO THE…	4xvj PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	412-423	100
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Structure of Hepatitis C Virus Envelope glycoprotein E2 antigenic region 434-446 bound to the broad…	4z0x PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	435-446	100
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Three dimensional structure of broadly neutralizing human anti - Hepatitis C virus (HCV) glycoprote…	4jzn PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	435-446	100	1×SO4;
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Structure of the Hepatitis C virus envelope glycoprotein E2 antigenic region 412-423 bound to the 2…	6bzy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	412-422	100
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Crystal structure of Fab C2 in complex with a Cyclic variant of Hepatitis C Virus E2 epitope I	5eoc PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	412-422	100
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Three dimensional structure of broadly neutralizing human anti - Hepatitis C virus (HCV) glycoprote…	4jzo PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	436-446	100
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Structure of the Hepatitis C virus envelope glycoprotein E2 antigenic region 412-423 bound to the G…	6bzv PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	413-422	100
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Structure of the Hepatitis C virus envelope glycoprotein E2 antigenic region 412-423 bound to the b…	6bzu PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	412-421	100
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Three dimensional structure of broadly neutralizing human anti - Hepatitis C virus (HCV) glycoprote…	5fgc PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	415-423	100
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Structure of the Hepatitis C virus envelope glycoprotein E2 antigenic region 412-423 bound to the G…	6bzw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	413-421	100
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Crystal structure of non-neutralizing antibody in complex with Epitope II of HCV E2	4q0x PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A2NHM3; Q99LC4;	434-442	100
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Structure of HCV E2 glycoprotein antigenic Epitope II bound to the broadly neutralizing antibody HC…	5erw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	438-446	100
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Three dimensional structure of broadly neutralizing human anti - Hepatitis C virus (HCV) glycoprote…	5fgb PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	417-421	100	2×GOL; 5×SO4;
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Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
8rjj.1.B	monomer	0.67	384-746		75.21
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7t6x.1.A	monomer	0.66	420-717	1×NAG;	88.95
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Protease NS2 810-1026; PRO_0000037572

	Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
	Structure of the catalytic domain of hepatitis C virus NS2	2hd0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	903-1026	98.39	4×BOG;
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Serine protease/helicase NS3 1027-1657; PRO_0000037573

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Crystal structure of the S139A mutant of Hepatitis C Virus NS3/4A protease	2o8m PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	1027-1696	98.34	2×ZN; 2×NA;
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Structure of NS3 complexed with a ketoamide inhibitor SCh491762	2oc0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	1027-1696	98.89	2×ZN; 1×BME; 1×HU1;
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HCV NS3 Protease Domain with a Ketoamide Inhibitor Covalently bound.	2a4r PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	1027-1696	98.89	2×ZN; 1×BNH;
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Discovery of the HCV NS3/4A Protease Inhibitor SCH503034. Key Steps in Structure-Based Optimization	2obq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	1027-1696	98.89	2×ZN;
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HCV NS3 protease domain with NS4a peptide and a ketoamide inhibitor with P1 and P2 cyclopropylalann…	2f9v PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	1027-1696	98.89	2×ZN; 1×BN6;
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Structure of Hepatitis C Viral NS3 protease domain complexed with NS4A peptide and ketoamide SCH503…	2oc8 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	1027-1696	98.89	2×ZN; 1×BME; 1×U5G;
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Structure of the HCV NS3/4A Protease Inhibitor CVS4819	2oc1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	1027-1696	98.89	2×ZN; 1×HU2;
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Structure of Hepatitis C Viral NS3 protease domain complexed with NS4A peptide and ketoamide SCH571…	2oc7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	1027-1696	98.89	2×ZN; 1×BME; 1×HU4;
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crystal structure of HCV NS3-4A R155K mutant	2oin PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	1055-1693	98.01	1×ZN;
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Molecular mechanisms of viral and host-cell substrate recognition by HCV NS3/4A protease	3rc4 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q8IUC6;	1026-1206	89.5	1×SO4; 1×ZN;
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Molecular mechanisms of viral and host-cell substrate recognition by HCV NS3/4A protease	3rc5 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q7Z434;	1026-1206	89.5	2×SO4; 1×ZN;
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M9A HCV Protease complex with pentapeptide keto-amide inhibitor	1rgq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O39914;	1027-1207	98.05	2×ZN; 1×AKP;
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CRYSTAL STRUCTURE OF HCV NS3 PROTEASE DOMAIN:NS4A PEPTIDE COMPLEX WITH COVALENTLY BOUND INHIBITOR (…	1n1l PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O39914;	1027-1206	98.33	1×ZN; 1×TRL;
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Protein-ligand complex of a novel macrocyclic HCV NS3 protease inhibitor derived from amino cyclic …	2xni PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer C9WU77;	1027-1206	98.89	1×TR8; 2×ZN; 2×MG;
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HCV NS3 PROTEASE DOMAIN:NS4A PEPTIDE COMPLEX	1a1r PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer O39914;	1055-1206	99.34	1×ZN;
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A T cell receptor in complex with HLA-A0201 restricted Hepatitis C virus NS3 peptide (KLVALGINAV)	5yxn PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04439; P61769;	1406-1415	100
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Crystal structure of 1406 TCR bound to HLA-A2 with HCV 1406-1415 antigen peptide	5jzi PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04439; P61769;	1406-1415	100
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an affinity enhanced T cell receptor in complex with HLA-A0201 restricted HCV NS3 peptide KLVALGINAV	5yxu PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04439; P61769;	1406-1415	100
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Crystal structure of HLA molecule with an KIR receptor	7duu PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer F6IQA6; P43631; P61769;	1254-1262	100
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STRUCTURE OF THE HEPATITIS C VIRUS RNA HELICASE DOMAIN	1hei PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	1213-1655	98.42	2×CA;
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HEPATITIS C VIRUS NS3 HELICASE DOMAIN COMPLEXED WITH SINGLE STRANDED SDNA	1a1v PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	1216-1650	98.38	1×SO4;
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CRYSTAL STRUCTURE OF HEPATIS C VIRUS PROTEASE (NS3) COMPLEXED WITH TRIPEPTIDIC ACYL SULFONAMIDE INH…	6bqj PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	1030-1208	92.18	1×Z1B; 1×ZN; 1×CL; 2×ACT;
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CRYSTAL STRUCTURE OF HEPATIS C VIRUS PROTEASE (NS3) COMPLEXED WITH TRIPEPTIDIC ACYL SULFONAMIDE INH…	6bqk PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	1030-1208	92.18	1×Z1E; 1×ZN;
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Solution structure of an engineered arginine-rich subdomain 2 of the hepatitis C virus NS3 RNA heli…	1onb PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	1353-1507	97.11
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Solution Structure of an Engineered Arginine-rich Subdomain 2 of the Hepatitis C Virus NS3 RNA Heli…	1jr6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	1353-1507	97.11
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Non-structural protein 4A 1658-1711; PRO_0000037574

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Crystal structure of the S139A mutant of Hepatitis C Virus NS3/4A protease	2o8m PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	1027-1696	98.34	2×ZN; 2×NA;
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Structure of NS3 complexed with a ketoamide inhibitor SCh491762	2oc0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	1027-1696	98.89	2×ZN; 1×BME; 1×HU1;
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HCV NS3 Protease Domain with a Ketoamide Inhibitor Covalently bound.	2a4r PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	1027-1696	98.89	2×ZN; 1×BNH;
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Discovery of the HCV NS3/4A Protease Inhibitor SCH503034. Key Steps in Structure-Based Optimization	2obq PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	1027-1696	98.89	2×ZN;
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HCV NS3 protease domain with NS4a peptide and a ketoamide inhibitor with P1 and P2 cyclopropylalann…	2f9v PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	1027-1696	98.89	2×ZN; 1×BN6;
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Structure of Hepatitis C Viral NS3 protease domain complexed with NS4A peptide and ketoamide SCH503…	2oc8 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	1027-1696	98.89	2×ZN; 1×BME; 1×U5G;
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Structure of the HCV NS3/4A Protease Inhibitor CVS4819	2oc1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	1027-1696	98.89	2×ZN; 1×HU2;
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Structure of Hepatitis C Viral NS3 protease domain complexed with NS4A peptide and ketoamide SCH571…	2oc7 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	1027-1696	98.89	2×ZN; 1×BME; 1×HU4;
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crystal structure of HCV NS3-4A R155K mutant	2oin PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer	1055-1693	98.01	1×ZN;
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Crystal structure of HCV NS3-4A V36M mutant	2qv1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A1Z093;	1678-1693	93.75	1×ZN;
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Crystal Structure of Hepatitis C Virus NS3.4A protease	2p59 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer Q91RS4;	1678-1693	93.75
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Non-structural protein 4B 1712-1972; PRO_0000037575

Description	PDB ID	Oligo-state	Range	Seq id (%)
The solution structure of HCV NS4B(40-69)	2jxf PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	1751-1780	100
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Solution structure of HCV NS4B(227-254)	2kdr PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	1938-1965	100
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Non-structural protein 5A 1973-2420; PRO_0000037576

Description	PDB ID	Oligo-state	Range	Seq id (%)
NMR structure of the membrane anchor domain (1-31) of the nonstructural protein 5A (NS5A) of hepati…	1r7e PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	1973-2003	100
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NMR structure of the membrane anchor domain (1-31) of the nonstructural protein 5A (NS5A) of hepati…	1r7f PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	1973-2003	100
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NMR structure of the membrane anchor domain (1-31) of the nonstructural protein 5A (NS5A) of hepati…	1r7g PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	1973-2003	100
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NMR structure of the membrane anchor domain (1-31) of the nonstructural protein 5A (NS5A) of hepati…	1r7c PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	1973-2003	100
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NMR structure of the membrane anchor domain (1-31) of the nonstructural protein 5A (NS5A) of hepati…	1r7d PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	1973-2003	100
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RNA-directed RNA polymerase 2421-3011; PRO_0000037577

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
HCV-H77 NS5B Polymerase Complexed With GTP	2xi3 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	2421-2982	98.22	3×GTP; 3×MG;
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HCV-H77 NS5B Apo Polymerase	2xi2 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	2421-2982	98.22	7×SO4;
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Structure of the C-terminal membrane domain of HCV NS5B protein	2n1p PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	2982-3011	96.67
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	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	4khm.1.A	monomer	0.83	2421-2982	1×1PV;	97.19
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

P27958 (POLG_HCV77) Hepatitis C virus genotype 1a (isolate H77) (HCV)

Genome polyprotein UniProtKBInterProInteractive Modelling

Available Structures

Mature core protein 2-177; PRO_0000037567

Core protein precursor 2-191; PRO_0000037566

Envelope glycoprotein E1 192-383; PRO_0000037569

Envelope glycoprotein E2 384-746; PRO_0000037570

Protease NS2 810-1026; PRO_0000037572

Serine protease/helicase NS3 1027-1657; PRO_0000037573

Non-structural protein 4A 1658-1711; PRO_0000037574

Non-structural protein 4B 1712-1972; PRO_0000037575

Non-structural protein 5A 1973-2420; PRO_0000037576

RNA-directed RNA polymerase 2421-3011; PRO_0000037577

Alignments

Background

Resolution

Genome polyprotein UniProtKB InterPro Interactive Modelling