P40693 | SWISS-MODEL Repository

P40693 (RLP7_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

Ribosome biogenesis protein RLP7 UniProtKB InterPro STRING Interactive Modelling

322 aa; Sequence (Fasta) ; 6 identical sequences: Saccharomyces cerevisiae: N1NZN2, C8ZFM4, A0A8H4BY26, B3LPP0; Saccharomyces boulardii: A0A0L8VIV3; Saccharomyces cerevisiae x Saccharomyces kudriavzevii: H0GMS4

It is possible new templates exist for this target since these models were created.

Available Structures

32 Experimental Structures

Description	PDB ID	Oligo-state	Range	Ligands
Arx1 pre-60S particle.	4v7f SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX43; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P38061; P49166; P49167; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q12522; Q12690;	1-322
Assess
State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pr…	6em5 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer O14455; P04456; P05737; P05738; P05740; P05743; P05744; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P10962; P14120; P14126; P17076; P25582; P26784; P33201; P35178; P36049; P36105; P38061; P38202; P38779; P38805; P40007; P40010; P40078; P40991; P49166; P49167; P53136; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690;	12-322
Assess
Nog1-TAP associated immature ribosomal particle population E from S. cerevisiae	7ohr SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25582; P26784; P33201; P36049; P36105; P38061; P38779; P40007; P40010; P40078; P40991; P49166; P49167; P53261; P53927; P87262; Q02326; Q02892; Q03532; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690;	12-322	1×ZN;
Assess
State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model	7r7a SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX43; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25582; P25808; P26784; P33201; P36049; P36105; P38061; P38202; P38779; P39744; P40007; P40010; P40078; P40991; P43586; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690;	12-322	2×ZN;
Assess
State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes	6elz SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25582; P26784; P33201; P36049; P36105; P38061; P38202; P38779; P40007; P40010; P40078; P40991; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690;	12-322	1×ZN;
Assess
Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down…	7ohv SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P14126; P17076; P25582; P26784; P33201; P36049; P36105; P38061; P38779; P40007; P40078; P49166; P49167; P53261; P53927; Q02326; Q02892; Q03532; Q04660; Q07915; Q08235; Q12024; Q12522; Q12690;	12-322	1×ZN;
Assess
State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite model	7nac SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX43; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25582; P25808; P26784; P33201; P36049; P36105; P38061; P38202; P38779; P39744; P40007; P40010; P40078; P40991; P43586; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q03532; Q04031; Q04660; Q07896; Q07915; Q08235; Q08962; Q12024; Q12522; Q12690;	12-322	2×ZN; 1×SAH;
Assess
State E2 nucleolar 60S ribosome biogenesis intermediate - Foot region model	7r6q SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04456; P05745; P05748; P0C2H6; P0CX84; P17076; P25582; P38779; P40007; P53261; P53927; P87262; Q03532; Q04660; Q12690;	12-322
Assess
Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 A…	7btb SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40078; P49166; P49167; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q07915; Q08746; Q12080; Q12522; Q12690;	15-322	2×GTP; 2×MG; 3×ZN;
Assess
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain	7uqz SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P47019; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12080; Q12522; Q12690;	15-322	81×MG; 3×B3P; 5×ZN; 2×GDP; 1×K;
Assess
State NE1 nucleolar 60S ribosome biogenesis intermediate - Overall model	7u0h SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25582; P26784; P33201; P36105; P38061; P38202; P38779; P40010; P40078; P49166; P49167; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q07915; Q12080; Q12522; Q12690;	15-322	1×MG; 4×ZN;
Assess
Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae	7ohq SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q07915; Q08746; Q12080; Q12522; Q12690;	15-322	2×MG; 3×ZN;
Assess
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state	7uoo SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P47019; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12080; Q12522; Q12690;	15-322	81×MG; 3×B3P; 5×ZN; 1×GDP; 1×GTP; 1×K;
Assess
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppr…	7v08 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P47019; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12080; Q12522; Q12690;	15-322	81×MG; 3×B3P; 5×ZN; 2×GDP; 1×K;
Assess
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strai…	7uqb SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX53; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P47019; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12080; Q12522; Q12690;	15-322	3×B3P; 81×MG; 5×ZN; 2×GDP; 1×ALF; 1×K;
Assess
pre-60S State NE2 (TAP-Flag-Nop53)	6yly SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P26784; P33201; P36105; P38061; P38202; P38779; P40010; P40078; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q07915; Q08004; Q12080; Q12522; Q12690;	15-322	3×ZN;
Assess
Cryo-Em structure of eukaryotic pre-60S ribosome subunit from Saccharomyces cerevisiae rpf2 delta 2…	6m62 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12080; Q12522; Q12690;	15-322	4×ZN; 2×GTP; 2×MG;
Assess
Cryo-em structure of eukaryotic pre-60S ribosomal subunits	3jct SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C0W9; P0C2H6; P0C2H8; P0CX23; P0CX25; P0CX41; P0CX45; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25382; P26321; P26784; P33201; P36105; P36160; P38061; P38202; P38779; P40010; P40078; P49166; P49167; P53188; P53261; P53742; P53927; P87262; Q02326; Q02753; Q02892; Q03862; Q07915; Q08004; Q08746; Q12080; Q12522; Q12690;	15-322	4×ZN; 2×GTP; 2×MG;
Assess
pre-60S State NE1 (TAP-Flag-Nop53)	6ylx SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P02406; P04456; P04650; P05737; P05738; P05740; P05743; P05744; P05745; P05748; P05749; P0C2H6; P0C2H8; P0CX23; P0CX41; P0CX49; P0CX82; P0CX84; P10664; P14120; P14126; P17076; P25582; P26784; P33201; P36105; P38061; P38202; P38779; P40010; P40078; P49166; P49167; P53261; P53927; P87262; Q02326; Q02753; Q02892; Q07915; Q12080; Q12522; Q12690;	15-322
Assess
Yeast nucleolar pre-60S ribosomal subunit (state 3)	6cb1 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04456; P05737; P05740; P05743; P05744; P05745; P05748; P0C2H6; P0CX23; P0CX49; P0CX84; P10664; P10962; P14120; P17076; P26784; P35178; P36105; P38061; P38779; P38805; P40007; P49166; P49167; P53136; P53261; P53927; P87262; Q02326; Q03532; Q04660; Q08235; Q12690;	20-322	2×ZN;
Assess
State B architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pr…	6em4 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer O14455; P05737; P05740; P05743; P05744; P05748; P0CX23; P0CX41; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P35178; P36049; P36105; P38061; P38779; P38805; P40007; P49166; P53136; P53261; P53927; Q02326; Q03532; Q04660; Q07915; Q08235; Q12522; Q12690;	54-322
Assess
Yeast co-transcriptional Noc1-Noc2 RNP assembly checkpoint intermediate	8e5t SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P05737; P05744; P05745; P05748; P0CX23; P0CX49; P10664; P10962; P17076; P26784; P35178; P36049; P36105; P38061; P38779; P39744; P53261; P53927; Q02326; Q03532; Q04660; Q08235; Q12176; Q12690;	54-322	33×MG; 1×ZN;
Assess
State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pr…	6em3 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer O14455; P05737; P05740; P05743; P05744; P05748; P0CX23; P0CX49; P0CX84; P10664; P10962; P17076; P26784; P35178; P36049; P36105; P38061; P38779; P38805; P40007; P49166; P53136; P53261; P53927; Q02326; Q03532; Q04660; Q08235; Q12690;	54-322
Assess
Yeast nucleolar pre-60S ribosomal subunit (state 2)	6c0f SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P05737; P05740; P05743; P05744; P05745; P05748; P0CX23; P0CX41; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P35178; P36080; P36105; P38061; P38779; P38789; P38805; P40007; P49166; P53136; P53261; P53927; Q02326; Q02892; Q03532; Q04660; Q06511; Q07915; Q08235; Q12522; Q12690;	54-322	3×ZN;
Assess
Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)	5z3g SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P05737; P05738; P05740; P05743; P05744; P05745; P05748; P0CX23; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P35178; P36049; P36105; P38061; P38779; P38805; P49166; P53136; P53261; P53927; Q02326; Q03532; Q08235; Q12522; Q12690;	55-322
Assess
Nog1-TAP associated immature ribosomal particle population F from S. cerevisiae	7ohs SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P05737; P05738; P05740; P05743; P05744; P05745; P05748; P0CX23; P0CX41; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P33201; P35178; P36105; P38061; P38779; P38805; P40007; P40078; P49166; P53136; P53261; P53927; Q02326; Q02892; Q03532; Q04660; Q07915; Q08235; Q12522; Q12690;	53-317	2×ZN;
Assess
Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut dow…	7ohw SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P05737; P05738; P05740; P05743; P05744; P05745; P05748; P0CX23; P0CX41; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P33201; P35178; P36049; P36105; P38061; P38779; P38805; P40007; P40078; P49166; P53136; P53261; P53927; Q02326; Q02892; Q03532; Q04660; Q08235; Q12522; Q12690;	53-317	1×ZN;
Assess
State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes	6em1 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer O14455; P05737; P05738; P05740; P05743; P05744; P05748; P0CX23; P0CX41; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P33201; P35178; P36049; P36105; P38061; P38202; P38779; P38805; P40007; P40010; P40078; P49166; P53136; P53261; P53927; Q02326; Q02892; Q03532; Q04660; Q07915; Q08235; Q12522; Q12690;	53-317	2×ZN;
Assess
Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut dow…	7ohp SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P05737; P05738; P05740; P05743; P05744; P05745; P05748; P0CX23; P0CX41; P0CX49; P0CX84; P10664; P14126; P17076; P26784; P33201; P36105; P38061; P38779; P40007; P40078; P49166; P53261; P53927; Q02326; Q02892; Q03532; Q04660; Q12522; Q12690;	55-317	1×ZN;
Assess
Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut dow…	7ohx SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P05737; P05738; P05740; P05743; P05744; P05745; P05748; P0CX23; P0CX49; P0CX84; P10664; P10962; P14126; P17076; P26784; P33201; P35178; P36105; P38061; P38779; P38805; P40007; P49166; P53136; P53261; P53927; Q02326; Q02892; Q03532; Q04660; Q07915; Q12522; Q12690;	56-311	2×ZN;
Assess
State E2 nucleolar 60S ribosomal biogenesis intermediate - Spb4 local refinement model	7nad SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04456; P05740; P05749; P0C2H6; P0C2H8; P0CX41; P0CX82; P14120; P14126; P17076; P25582; P25808; P39744; P49166; P49167; P53261; P87262; Q02892; Q04031; Q04660; Q07896; Q07915; Q12024;	12-37	1×ZN;
Assess
State E1 nucleolar 60S ribosome biogenesis intermediate - Spb4 local model	7r72 SMTL PDBe PDBe-KB PDBj PDBsum RCSB	Heteromer P04456; P05740; P05749; P0C2H6; P0C2H8; P0CX82; P14120; P14126; P17076; P25582; P25808; P39744; P49166; P49167; P53261; P87262; Q02892; Q04660; Q07896; Q07915; Q12024;	12-37	1×ZN;
Assess

2 SWISS-MODEL models

Template	Oligo-state	QMEANDisCo	Range	Trg-Tpl Seq id (%)
6m62.1.p	monomer	0.74	15-322	100.00
Assess
8i9v.1.4	monomer	0.59	10-322	38.55
Assess

Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

P40693 (RLP7_YEAST) Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)

Ribosome biogenesis protein RLP7 UniProtKBInterProSTRINGInteractive Modelling

Available Structures

32 Experimental Structures

2 SWISS-MODEL models

Alignments

Background

Resolution

Ribosome biogenesis protein RLP7 UniProtKB InterPro STRING Interactive Modelling