SMTL ID : 6cb1.1

Yeast nucleolar pre-60S ribosomal subunit (state 3)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain F: C.15, C.28, C.38, C.43 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.15, F:C.28, F:C.38, F:C.43 ZN.2: 4 residues within 4Å: Chain 4: C.19, C.22, C.34, C.37 4 PLIP interactions: 4 interactions with chain 4 Metal complexes: 4:C.19, 4:C.22, 4:C.34, 4:C.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sanghai, Z.A. et al., Modular assembly of the nucleolar pre-60S ribosomal subunit. Nature (2018)

Release Date

2018-03-14

Peptides

Ribosome biogenesis protein NSA1: D
60S ribosomal protein L4-A: E
Protein MAK16: F
60S ribosomal protein L6-A: G
60S ribosomal protein L7-A: H
60S ribosomal protein L8-A: I
Ribosome production factor 1: J
Proteasome-interacting protein CIC1: K
60S ribosomal protein L13-A: L
60S ribosomal protein L14-A: M
60S ribosomal protein L15-A: N
60S ribosomal protein L16-A: O
60S ribosomal protein L17-A: P
60S ribosomal protein L18-A: Q
60S ribosomal protein L20-A: R
60S ribosomal protein L25: S
60S ribosomal protein L26-A: T
60S ribosomal protein L27-A: U
Nucleolar protein 16: V
Ribosome biogenesis protein BRX1: W
60S ribosomal protein L30: X
Ribosome biogenesis protein YTM1: Y
60S ribosomal protein L32: Z
60S ribosomal protein L33-A: 0
60S ribosomal protein L34-A: 1
60S ribosomal protein L35-A: 2
60S ribosomal protein L36-A: 3
60S ribosomal protein L37-A: 4
60S ribosomal protein L38: 5
rRNA-processing protein EBP2: 6
Pescadillo homolog: 7
Ribosome biogenesis protein 15: 8
ATP-dependent RNA helicase HAS1: 9
Ribosome biogenesis protein ERB1: a
Ribosome biogenesis protein RLP7: b
BRX1 associated peptide: c
Ribosomal RNA-processing protein 1: d

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

D
A

E
C

F
D

G
E

H
F

I
G

J
I

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
S

S
X

T
Y

U
Z

V
7

W
b

X
c

Y
d

Z
e

0
f

1
g

2
h

3
i

4
j

5
k

6
m

7
n

8
o

9
p

a
s

b
t

c
x

d
z

Ribosome biogenesis protein NSA1

60S ribosomal protein L4-A

Protein MAK16

60S ribosomal protein L6-A

60S ribosomal protein L7-A

60S ribosomal protein L8-A

Ribosome production factor 1

Proteasome-interacting protein CIC1

60S ribosomal protein L13-A

60S ribosomal protein L14-A

60S ribosomal protein L15-A

60S ribosomal protein L16-A

60S ribosomal protein L17-A

60S ribosomal protein L18-A

60S ribosomal protein L20-A

60S ribosomal protein L25

60S ribosomal protein L26-A

60S ribosomal protein L27-A

Nucleolar protein 16

Ribosome biogenesis protein BRX1

60S ribosomal protein L30

Ribosome biogenesis protein YTM1

60S ribosomal protein L32

60S ribosomal protein L33-A

60S ribosomal protein L34-A

60S ribosomal protein L35-A

60S ribosomal protein L36-A

60S ribosomal protein L37-A

60S ribosomal protein L38

rRNA-processing protein EBP2

Pescadillo homolog

Ribosome biogenesis protein 15

ATP-dependent RNA helicase HAS1

Ribosome biogenesis protein ERB1

Ribosome biogenesis protein RLP7

BRX1 associated peptide

Ribosomal RNA-processing protein 1

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