P61077 (UB2D3_HUMAN) Homo sapiens (Human)
Ubiquitin-conjugating enzyme E2 D3 UniProtKBProtein AtlasInterProInteractive Modelling
Available Structures
43 Experimental Structures
| Description | PDB ID | Oligo-state | Range | Seq id (%) | Ligands | |
|---|---|---|---|---|---|---|
| Complex of human TRIM2 RING domain, UBCH5C, and Ubiquitin |
Heteromer P0CG48; Q9C040; | 98.64 | 9×GOL; 4×ZN; 1×PE8; | |||
| SdcA in complex with the E2, UbcH5C |
Heteromer Q6RCR3; | 99.32 | ||||
| Crystal structure of the U-BOX domain of human E4B ubiquitin ligase in complex with UBCH5C E2 ubiqu… |
Heteromer O95155; | 100 | ||||
| Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5… |
Heteromer P04908; P06899; P62805; P68431; Q8IYW5; | 97.28 | 2×ZN; | |||
| Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5… |
Heteromer P04908; P06899; P62805; P68431; Q8IYW5; | 97.28 | 2×ZN; | |||
| Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5… |
Heteromer P04908; P06899; P0CG47; P62805; P68431; Q8IYW5; | 97.28 | 2×ZN; | |||
| Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5… |
Heteromer P04908; P06899; P0CG47; P62805; P68431; Q8IYW5; | 97.28 | 2×ZN; | |||
| Cryo-EM structure of BRCA1/BARD1 bound to H2AK127-UbcH5c-Ub nucleosome |
Heteromer O60814; P04908; P38398; P62805; Q71DI3; Q99728; | 97.96 | 4×ZN; | |||
| Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5… |
Heteromer P04908; P06899; P62805; P68431; Q8IYW5; | 97.28 | 2×ZN; | |||
| Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5… |
Heteromer P04908; P06899; P0CG47; P62805; P68431; Q8IYW5; | 97.28 | 2×ZN; | |||
| Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c with back… |
Heteromer P04908; P06899; P0CG47; P62805; P68431; Q8IYW5; | 97.28 | 2×ZN; | |||
| Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5… |
Heteromer P04908; P06899; P62805; P68431; Q8IYW5; | 97.28 | 2×ZN; | |||
| Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5… |
Heteromer P04908; P06899; P0CG47; P62805; P68431; Q8IYW5; | 97.28 | 2×ZN; | |||
| Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c with back… |
Heteromer P04908; P06899; P0CG47; P62805; P68431; Q8IYW5; | 97.28 | 2×ZN; | |||
| Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5… |
Heteromer P04908; P06899; P0CG47; P62805; P68431; Q8IYW5; | 97.28 | 2×ZN; | |||
| Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c (UbcH5c c… |
Heteromer P04908; P06899; P62805; P68431; Q8IYW5; | 97.28 | 2×ZN; | |||
| Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5… |
Heteromer P04908; P06899; P0CG47; P62805; P68431; Q8IYW5; | 97.28 | 2×ZN; | |||
| Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5… |
Heteromer P04908; P06899; P62805; P68431; Q8IYW5; | 97.28 | 2×ZN; | |||
| Cryo-EM structure of the human nucleosome core particle in complex with RNF168 and UbcH5c~Ub (UbcH5… |
Heteromer P04908; P06899; P62805; P68431; Q8IYW5; | 97.28 | 2×ZN; | |||
| Cryo-EM structures of RNF168/UbcH5c-Ub in complex with H2AK13Ub nucleosomes determined by intein-ba… |
Heteromer O60814; P04908; P62805; P62979; Q71DI3; Q8IYW5; | 97.96 | 2×ZN; | |||
| Cryo-EM structures of RNF168/UbcH5c-Ub in complex with H2AK13Ub nucleosomes determined by activity-… |
Heteromer O60814; P04908; P62805; Q71DI3; Q8IYW5; | 97.92 | 2×ZN; | |||
| PCGF5-RING1B-UbcH5c complex |
Heteromer Q86SE9; Q99496; | 100 | 4×ZN; | |||
| Structure of the stable UBE2D3-UbDha conjugate |
Heteromer P0CG47; | 100 | 1×GOL; | |||
| UbcH5c~Ubiquitin Conjugate |
Heteromer P0CG48; | 99.31 | 4×GOL; | |||
| RCR E3 ligase E2-Ubiquitin transthiolation intermediate |
Heteromer O75592; P0CG48; | 97.26 | 6×ZN; 1×LWZ; | |||
| Bmi1/Ring1b-UbcH5c complex structure |
Heteromer P35226; Q99496; | 100 | 4×ZN; | |||
| Structure of Shigella effector OspG in complex with host UbcH5c- Ubiquitin conjugate |
Heteromer P0CG48; Q99PZ6; | 99.31 | ||||
| Crystal structure of the Ring1B/Bmi1/UbcH5c PRC1 ubiquitylation module bound to the nucleosome core… |
Heteromer P02281; P06897; P35226; P62799; P84233; Q99496; | 100 | 8×ZN; | |||
| Cryo-EM structure of the human nucleosome core particle ubiquitylated at histone H2A lysine 15 in c… |
Heteromer P04908; P06899; P62805; P68431; Q8IYW5; | 100 | 2×ZN; | |||
| Solution Structure of the UbcH5c/Ub Non-covalent Complex |
Heteromer P0CG48; | 100 | ||||
| Cryo-EM structure of the human nucleosome core particle in complex with BRCA1-BARD1-UbcH5c |
Heteromer P04908; P06899; P38398; P62805; P68431; Q99728; | 100 | 4×ZN; | |||
| Cryo-EM structure of the human nucleosome core particle in complex with RNF168-UbcH5c |
Heteromer P04908; P06899; P62805; P68431; Q8IYW5; | 100 | 2×ZN; | |||
| Cryo-EM structure of the BRCA1-UbcH5c/BARD1 E3-E2 module bound to a nucleosome |
Heteromer O60814; P38398; P62805; Q6FI13; Q71DI3; Q99728; | 99.31 | 4×ZN; | |||
| Cryo-EM structures of RNF168/UbcH5c-Ub/nucleosomes complex determined by activity-based chemical tr… |
Heteromer O60814; P04908; P62805; P62979; Q71DI3; Q8IYW5; | 97.89 | 2×ZN; | |||
| Crystal structure of human ubiquitin-conjugating enzyme UBCH5C | monomer | 100 | ||||
| Crystal structure of ubch5c | monomer | 100 | ||||
| Crystal structure of RNF168 (RING)-UbcH5c fused to H2A-H2B via a 12-residue linker | monomer | 99.31 | 3×NA; 2×ZN; 4×CL; | |||
| Crystal structure of RNF168 (RING)-UbcH5c fused to H2A-H2B via a 4-residue linker | monomer | 100 | 17×CL; 3×GOL; 2×ZN; 1×NA; | |||
| Crystal structure of RNF168 (RING)-UbcH5c fused to H2A-H2B via a 2-residue linker | monomer | 100 | 7×CL; 3×GOL; 2×ZN; 3×NA; | |||
| Crystal structure of RNF168 (RING)-UbcH5c fused to H2A-H2B via a 20-residue linker (crystallization… | monomer | 99.31 | 2×ZN; 4×CL; | |||
| Crystal structure of RNF168 (RING)-UbcH5c fused to H2A-H2B via a 20-residue linker (crystallization… | monomer | 99.31 | 2×ZN; | |||
| Crystal structure of RNF168 (RING)-UbcH5c fused to H2A-H2B via a 26-residue linker (RING not modele… | monomer | 98.63 | ||||
| Crystal structure of RNF168 (RING)-UbcH5c fused to H2A-H2B via a 20-residue linker (condition 2. RI… | monomer | 99.31 | ||||
1 SWISS-MODEL model
| Template | Oligo-state | QMEANDisCo | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|
| 6w7z.1.A | monomer | 0.89 | 94.56 | |||
2 SWISS-MODEL models built on isoform sequence
| Template | Isoform | Oligo-state | QMEANDisCo | Range | Ligands | Trg-Tpl Seq id (%) | |
|---|---|---|---|---|---|---|---|
| Isoform 2 | 6w7z.1.A | monomer | 0.88 | 93.88 | |||
| Isoform 3 | 8uq8.1.A | monomer | 0.88 | 96.60 | |||