SMTL ID : 9ipu.1

cryo-EM structure of the RNF168(1-193)/UbcH5c-Ub ubiquitylation module bound to H1.0-K63-Ub3 modified chromatosome

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-2-2-2-2-1-1-1-mer
Ligands
2 x ZN: ZINC ION
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Shi, Q. et al., Chemically and Site-specifically Ubiquitylated Linker Histone H1 Facilitates RNF168-Mediated Nucleosomal H2A Ubiquitylation. To Be Published
Release Date
2024-10-02
Peptides
Histone H1.0: A
Histone H3.2: BF
Histone H4: CG
Histone H2A type 1-B/E: DH
Histone H2B type 1-K: EI
Ubiquitin-conjugating enzyme E2 D3: J
E3 ubiquitin-protein ligase RNF168: K
Ubiquitin: L
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
I
B
A
F
E
C
B
G
F
D
C
H
G
E
D
I
H
J
K
K
L
L
M

Histone H1.0

Histone H3.2

Histone H4

Toggle Identical (CG)

Histone H2A type 1-B/E

Toggle Identical (DH)

Histone H2B type 1-K

Toggle Identical (EI)

Ubiquitin-conjugating enzyme E2 D3

E3 ubiquitin-protein ligase RNF168

Ubiquitin

Related Entries With Identical Sequence

1kx3.1 | 1kx4.1 | 1kx5.1 | 1m18.1 | 1m19.1 | 1m1a.1 | 1p34.1 | 1p3a.1 | 1p3k.1 | 1p3l.1 | 1p3m.1 | 1s32.1 | 1xd3.1 | 1xd3.2 | 1zbb.1 | 1zla.1 | 2fj7.1 | 2ibi.1 | 2io5.1 | 2j7q.1 | 2j7q.2 | 2nzd.1 | 3b6f.1 | 3b6g.1 | 3by4.1 | 3c0r.1 | 3c0r.2 | 3c1b.1 | 3c1c.1 | 3c9k.1  more...