Q6YMS4 (POLG_DEN3S) Dengue virus type 3 (strain Sri Lanka/1266/2000) (DENV-3)
Genome polyprotein UniProtKBInterProInteractive Modelling
3390 aa; Sequence (Fasta)
Molecule Processing
| Capsid protein C | |
| Protein prM | |
| Peptide pr | |
| Small envelope protein M | |
| Envelope protein E | |
| Non-structural protein 1 | |
| Non-structural protein 2A | |
| Serine protease subunit NS2B | |
| Serine protease NS3 | |
| Non-structural protein 4A | |
| Non-structural protein 4B | |
| RNA-directed RNA polymerase NS5 |
It is possible new templates exist for this target since these models were created.
Sequence Features
| 1524 | Charge relay system; for serine protease NS3 activity | ||
| 1548 | Charge relay system; for serine protease NS3 activity | ||
| 1608 | Charge relay system; for serine protease NS3 activity | ||
| 2551 | For 2'-O-MTase activity | ||
| 2636 | For 2'-O-MTase activity | ||
| 2670 | For 2'-O-MTase activity | ||
| 2706 | For 2'-O-MTase activity | ||
| 2927 | Zinc 1 | ||
| 2931 | Zinc 1; via tele nitrogen | ||
| 2936 | Zinc 1 | ||
| 2939 | Zinc 1 | ||
| 3202 | Zinc 2; via tele nitrogen | ||
| 3218 | Zinc 2 | ||
| 3337 | Zinc 2 | ||
| 1931 | Involved in NS3 ATPase and RTPase activities | ||
| 1934 | Involved in NS3 ATPase and RTPase activities | ||
| 2504 | mRNA cap binding | ||
| 2507 | mRNA cap binding; via carbonyl oxygen | ||
| 2508 | mRNA cap binding | ||
| 2510 | mRNA cap binding; via carbonyl oxygen | ||
| 2515 | mRNA cap binding | ||
| 2519 | mRNA cap binding | ||
| 2551 | Essential for 2'-O-methyltransferase activity | ||
| 2636 | Essential for 2'-O-methyltransferase and N-7 methyltransferase activity | ||
| 2640 | mRNA cap binding | ||
| 2670 | Essential for 2'-O-methyltransferase activity | ||
| 2701 | mRNA cap binding | ||
| 2703 | mRNA cap binding | ||
| 2706 | Essential for 2'-O-methyltransferase activity | ||
| 97 | Q -> K | ||
| 684 | E -> A | ||
| 867 | L -> I | ||
| 1006 | T -> S | ||
| 1148 | L -> M | ||
| 1252 | V -> I | ||
| 1400 | P -> A | ||
| 1585 | T -> M | ||
| 1871 | T -> S | ||
| 2063 | K -> R | ||
| 2128 | D -> H | ||
| 2239 | T -> I | ||
| 2399 | S -> P | ||
| 2402 | F -> Y | ||
| 2856 | M -> L | ||
| 2862 | A -> V | ||
| 2864 | E -> G | ||
| 2970 | A -> V | ||
| 3093 | L -> V | ||
| 101-120 | Helical | ||
| 244-264 | Helical | ||
| 266-280 | Helical | ||
| 724-744 | Helical | ||
| 751-771 | Helical | ||
| 1194-1218 | Helical | ||
| 1225-1243 | Helical | ||
| 1268-1288 | Helical | ||
| 1290-1308 | Helical | ||
| 1316-1336 | Helical | ||
| 1345-1365 | Helical | ||
| 1369-1389 | Helical | ||
| 1444-1464 | Helical | ||
| 2147-2167 | Helical | ||
| 2170-2190 | Helical | ||
| 2192-2212 | Helical | ||
| 2228-2248 | Helical; Note=Signal for NS4B | ||
| 2274-2294 | Helical | ||
| 2306-2326 | Helical | ||
| 2347-2367 | Helical | ||
| 2413-2433 | Helical | ||
| 2459-2479 | Helical | ||
| 1667-1674 | ATP | ||
| 100-101 | Cleavage; by viral protease NS3 | ||
| 114-115 | Cleavage; by host signal peptidase | ||
| 205-206 | Cleavage; by host furin | ||
| 280-281 | Cleavage; by host signal peptidase | ||
| 773-774 | Cleavage; by host signal peptidase | ||
| 1125-1126 | Cleavage; by host | ||
| 1343-1344 | Cleavage; by viral protease NS3 | ||
| 1473-1474 | Cleavage; by autolysis | ||
| 2092-2093 | Cleavage; by autolysis | ||
| 2219-2220 | Cleavage; by viral protease NS3 | ||
| 2242-2243 | Cleavage; by host signal peptidase | ||
| 2490-2491 | Cleavage; by viral protease NS3 | ||
| 283-310 | |||
| 340-401 | |||
| 354-385 | |||
| 372-396 | |||
| 463-563 | |||
| 580-611 | |||
| 777-788 | |||
| 828-916 | |||
| 952-996 | |||
| 1053-1102 | |||
| 1064-1086 | |||
| 1085-1089 | |||
| 6-112 | Flavivirus capsid protein C IPR001122PF01003 | ||
| 120-204 | Flavivirus polyprotein propeptide IPR002535PF01570 | ||
| 207-279 | Envelope glycoprotein M, flavivirus IPR000069PF01004 | ||
| 282-574 | Flavivirus glycoprotein central and dimerisation domain IPR011998PF00869 | ||
| 576-671 | Flavivirus glycoprotein E, immunoglobulin-like domain IPR027287PF02832 | ||
| 776-1128 | Flavivirus non-structural protein NS1 IPR001157PF00948 | ||
| 1136-1314 | Flavivirus non-structural protein NS2A IPR000752PF01005 | ||
| 1347-1473 | Flavivirus non-structural protein NS2B IPR000487PF01002 | ||
| 1490-1641 | Flavivirus NS3, petidase S7 IPR001850PF00949 | ||
| 1658-1804 | DEAD box, Flavivirus IPR011492PF07652 | ||
| 2097-2238 | Flavivirus non-structural protein NS4A IPR000404PF01350 | ||
| 2243-2483 | Flavivirus non-structural protein NS4B IPR001528PF01349 | ||
| 2545-2713 | Ribosomal RNA methyltransferase FtsJ domain IPR002877PF01728 | ||
| 2740-3382 | RNA-directed RNA polymerase, flavivirus IPR000208PF00972 |
Sequence Alignments
Serine protease NS3 1474-2092; PRO_0000268098
| Description | Oligo-state | Ligands | Structure | Range | |
|---|---|---|---|---|---|
| Crystal Structure of HLA-A*11:01-GTS3 |
Heteromer P04439; P61769; | 1×K; | 5wjn | ||
| Assess | |||||
| D30 TCR in complex with HLA-A*11:01-GTS3 |
Heteromer P04439; P61769; | 5wkh | |||
| Assess | |||||
| Oligo-state | Ligands | QMEAN | Template | Range | Seq id (%) |
|---|---|---|---|---|---|
| monomer | -0.24 | 5yvj.1.A | 79.13 | ||
| Assess | |||||
| monomer | 1×MN; | -0.43 | 2whx.1.A | 79.38 | |
| Assess | |||||
RNA-directed RNA polymerase NS5 2491-3390; PRO_0000268102
| Description | Oligo-state | Ligands | Structure | Range | |
|---|---|---|---|---|---|
| Dengue virus RNA dependent RNA polymerase with residues from the NS5 linker region | homo-2-mer | 4×ZN; | 4c11 | ||
| Assess | |||||
| Dengue 3 NS5 protein with compound 27 | monomer | 2×ZN; 4×PEG; 1×6L2; 1×MG; 9×EDO; 1×SAH; | 5jjs | ||
| Assess | |||||
| Dengue virus full length NS5 complexed with viral Cap 0-RNA and SAH | monomer | 2×ZN; 1×SAH; 2×MG; 1×ACT; 1×M7G; | 5dto | ||
| Assess | |||||
| Dengue 3 NS5 protein with compound 29 | monomer | 2×ZN; 1×SAH; 1×68E; 6×EDO; 1×MG; 3×PEG; | 5jjr | ||
| Assess | |||||
| Dengue serotype 3 RNA-dependent RNA polymerase bound to compound 15 | monomer | 2×ZN; 1×LNY; | 5hmy | ||
| Assess | |||||
| Dengue serotype 3 RNA-dependent RNA polymerase bound to compound 5 | monomer | 2×ZN; 2×LNW; | 5hmw | ||
| Assess | |||||
| Dengue serotype 3 RNA-dependent RNA polymerase bound to compound 10 | monomer | 2×ZN; 2×LNX; | 5hmx | ||
| Assess | |||||
| Dengue serotype 3 RNA-dependent RNA polymerase | monomer | 2×ZN; 1×P6G; 3×PEG; | 4hhj | ||
| Assess | |||||
| DENGUE SEROTYPE 3 RNA-DEPENDENT RNA POLYMERASE BOUND TO COMPOUND 29 | monomer | 2×ZN; 1×68E; | 5i3q | ||
| Assess | |||||
| Dengue serotype 3 RNA-dependent RNA polymerase bound to compound 23 | monomer | 2×ZN; 1×LNZ; | 5hmz | ||
| Assess | |||||
| DENGUE SEROTYPE 3 RNA-DEPENDENT RNA POLYMERASE BOUND TO FD-83-KI26 | monomer | 2×ZN; 1×5V6; | 5f41 | ||
| Assess | |||||
| Dengue serotype 3 RNA-dependent RNA polymerase bound to PC-79-SH52 | monomer | 2×ZN; 1×5V5; | 5f3z | ||
| Assess | |||||
| Dengue serotype 3 RNA-dependent RNA polymerase bound to NITD-434 | monomer | 2×ZN; 3×GOL; 2×PEG; 1×V0M; | 6xd0 | ||
| Assess | |||||
| Dengue serotype 3 RNA-dependent RNA polymerase bound to compound 4 | monomer | 2×ZN; 1×LNN; | 5hn0 | ||
| Assess | |||||
| Dengue serotype 3 RNA-dependent RNA polymerase bound to JF-31-MG46 | monomer | 2×ZN; 1×5UH; | 5f3t | ||
| Assess | |||||
| Dengue serotype 3 RNA-dependent RNA polymerase bound to NITD-107 | monomer | 2×ZN; 2×VWS; 1×PEG; | 3vws | ||
| Assess | |||||
| Dengue-RdRp3-inhibitor complex co-crystallisation | monomer | 1×5V5; 2×ZN; 5×PEG; | 6h80 | ||
| Assess | |||||
| Dengue-RdRp3-inhibitor complex soaking | monomer | 1×5V5; 2×ZN; 8×PEG; | 6h9r | ||
| Assess | |||||
| DENGUE SEROTYPE 3 RNA-DEPENDENT RNA POLYMERASE BOUND TO COMPOUND 27 | monomer | 2×ZN; 1×68T; | 5i3p | ||
| Assess | |||||
| Dengue virus NS5 RNA dependent RNA polymerase domain | monomer | 2×ZN; 1×MG; 1×CL; 1×PGE; | 2j7u | ||
| Assess | |||||
| Dengue serotype 3 RNA-dependent RNA polymerase bound to NITD-640 | monomer | 2×ZN; 1×V0J; | 6xd1 | ||
| Assess | |||||
| Dengue virus NS5 RNA dependent RNA polymerase domain complexed with 3' dGTP | monomer | 2×ZN; 1×GTP; 1×PEG; | 2j7w | ||
| Assess | |||||
| Crystal structure of Dengue virus serotype 3 RNA dependent RNA polymerase bound to HeE1-2Tyr, a new… | monomer | 2×ZN; 1×6CJ; | 5iq6 | ||
| Assess | |||||
| DENGUE 3 NS5 METHYLTRANSFERASE BOUND TO S-ADENOSYL METHIONINE AND FRAGMENT NB3C2 | monomer | 1×SAM; 1×X0V; | 5eiw | ||
| Assess | |||||