Q6YMS4 (POLG_DEN3S) Dengue virus type 3 (strain Sri Lanka/1266/2000) (DENV-3)

Genome polyprotein UniProtKBInterProInteractive Modelling

3390 aa; Sequence (Fasta)

Molecule Processing
Capsid protein C
Protein prM
Peptide pr
Small envelope protein M
Envelope protein E
Non-structural protein 1
Non-structural protein 2A
Serine protease subunit NS2B
Serine protease NS3
Non-structural protein 4A
Non-structural protein 4B
RNA-directed RNA polymerase NS5

Sequence Features

Add
 1524Charge relay system; for serine protease NS3 activity
 1548Charge relay system; for serine protease NS3 activity
 1608Charge relay system; for serine protease NS3 activity
 2551For 2'-O-MTase activity
 2636For 2'-O-MTase activity
 2670For 2'-O-MTase activity
 2706For 2'-O-MTase activity
 2927Zinc 1
 2931Zinc 1; via tele nitrogen
 2936Zinc 1
 2939Zinc 1
 3202Zinc 2; via tele nitrogen
 3218Zinc 2
 3337Zinc 2
 1931Involved in NS3 ATPase and RTPase activities
 1934Involved in NS3 ATPase and RTPase activities
 2504mRNA cap binding
 2507mRNA cap binding; via carbonyl oxygen
 2508mRNA cap binding
 2510mRNA cap binding; via carbonyl oxygen
 2515mRNA cap binding
 2519mRNA cap binding
 2551Essential for 2'-O-methyltransferase activity
 2636Essential for 2'-O-methyltransferase and N-7 methyltransferase activity
 2640mRNA cap binding
 2670Essential for 2'-O-methyltransferase activity
 2701mRNA cap binding
 2703mRNA cap binding
 2706Essential for 2'-O-methyltransferase activity
 97Q -> K
 684E -> A
 867L -> I
 1006T -> S
 1148L -> M
 1252V -> I
 1400P -> A
 1585T -> M
 1871T -> S
 2063K -> R
 2128D -> H
 2239T -> I
 2399S -> P
 2402F -> Y
 2856M -> L
 2862A -> V
 2864E -> G
 2970A -> V
 3093L -> V
 101-120Helical
 244-264Helical
 266-280Helical
 724-744Helical
 751-771Helical
 1194-1218Helical
 1225-1243Helical
 1268-1288Helical
 1290-1308Helical
 1316-1336Helical
 1345-1365Helical
 1369-1389Helical
 1444-1464Helical
 2147-2167Helical
 2170-2190Helical
 2192-2212Helical
 2228-2248Helical; Note=Signal for NS4B
 2274-2294Helical
 2306-2326Helical
 2347-2367Helical
 2413-2433Helical
 2459-2479Helical
 1667-1674ATP
 100-101Cleavage; by viral protease NS3
 114-115Cleavage; by host signal peptidase
 205-206Cleavage; by host furin
 280-281Cleavage; by host signal peptidase
 773-774Cleavage; by host signal peptidase
 1125-1126Cleavage; by host
 1343-1344Cleavage; by viral protease NS3
 1473-1474Cleavage; by autolysis
 2092-2093Cleavage; by autolysis
 2219-2220Cleavage; by viral protease NS3
 2242-2243Cleavage; by host signal peptidase
 2490-2491Cleavage; by viral protease NS3
 283-310
 340-401
 354-385
 372-396
 463-563
 580-611
 777-788
 828-916
 952-996
 1053-1102
 1064-1086
 1085-1089
 6-112Flavivirus capsid protein C
IPR001122PF01003
 120-204Flavivirus polyprotein propeptide
IPR002535PF01570
 207-279Envelope glycoprotein M, flavivirus
IPR000069PF01004
 282-574Flavivirus glycoprotein central and dimerisation domain
IPR011998PF00869
 576-671Flavivirus glycoprotein E, immunoglobulin-like domain
IPR027287PF02832
 776-1128Flavivirus non-structural protein NS1
IPR001157PF00948
 1136-1314Flavivirus non-structural protein NS2A
IPR000752PF01005
 1347-1473Flavivirus non-structural protein NS2B
IPR000487PF01002
 1490-1641Flavivirus NS3, petidase S7
IPR001850PF00949
 1658-1804DEAD box, Flavivirus
IPR011492PF07652
 2097-2238Flavivirus non-structural protein NS4A
IPR000404PF01350
 2243-2483Flavivirus non-structural protein NS4B
IPR001528PF01349
 2545-2713Ribosomal RNA methyltransferase FtsJ domain
IPR002877PF01728
 2740-3382RNA-directed RNA polymerase, flavivirus
IPR000208PF00972

Sequence Alignments

Serine protease NS3 1474-2092; PRO_0000268098

DescriptionOligo-stateLigandsStructureRange
Crystal Structure of HLA-A*11:01-GTS3 Heteromer
P04439; P61769;
K;5wjn 1606-1615
Assess
D30 TCR in complex with HLA-A*11:01-GTS3 Heteromer
P04439; P61769;
5wkh 1606-1615
Assess
Oligo-stateLigandsQMEANTemplateRangeSeq id (%)
monomer -0.245yvj.1.A1491-2092
79.13
Assess
monomer MN;-0.432whx.1.A1494-2092
79.38
Assess

RNA-directed RNA polymerase NS5 2491-3390; PRO_0000268102

DescriptionOligo-stateLigandsStructureRange
Dengue virus RNA dependent RNA polymerase with residues from the NS5 linker regionhomo-2-mer ZN;4c11 2758-3379
Assess
Dengue 3 NS5 protein with compound 27monomer ZN;PEG;6L2;MG;EDO;SAH;5jjs 2496-3374
Assess
Dengue virus full length NS5 complexed with viral Cap 0-RNA and SAHmonomer ZN;SAH;MG;ACT;M7G;5dto 2496-3373
Assess
Dengue 3 NS5 protein with compound 29monomer ZN;SAH;68E;EDO;MG;PEG;5jjr 2497-3373
Assess
Dengue serotype 3 RNA-dependent RNA polymerase bound to compound 15monomer ZN;LNY;5hmy 2762-3379
Assess
Dengue serotype 3 RNA-dependent RNA polymerase bound to compound 5monomer ZN;LNW;5hmw 2762-3379
Assess
Dengue serotype 3 RNA-dependent RNA polymerase bound to compound 10monomer ZN;LNX;5hmx 2762-3378
Assess
Dengue serotype 3 RNA-dependent RNA polymerasemonomer ZN;P6G;PEG;4hhj 2762-3373
Assess
DENGUE SEROTYPE 3 RNA-DEPENDENT RNA POLYMERASE BOUND TO COMPOUND 29monomer ZN;68E;5i3q 2762-3373
Assess
Dengue serotype 3 RNA-dependent RNA polymerase bound to compound 23monomer ZN;LNZ;5hmz 2762-3373
Assess
DENGUE SEROTYPE 3 RNA-DEPENDENT RNA POLYMERASE BOUND TO FD-83-KI26monomer ZN;5V6;5f41 2762-3373
Assess
Dengue serotype 3 RNA-dependent RNA polymerase bound to PC-79-SH52monomer ZN;5V5;5f3z 2762-3373
Assess
Dengue serotype 3 RNA-dependent RNA polymerase bound to NITD-434monomer ZN;GOL;PEG;V0M;6xd0 2762-3373
Assess
Dengue serotype 3 RNA-dependent RNA polymerase bound to compound 4monomer ZN;LNN;5hn0 2762-3373
Assess
Dengue serotype 3 RNA-dependent RNA polymerase bound to JF-31-MG46monomer ZN;5UH;5f3t 2762-3373
Assess
Dengue serotype 3 RNA-dependent RNA polymerase bound to NITD-107monomer ZN;VWS;PEG;3vws 2762-3373
Assess
Dengue-RdRp3-inhibitor complex co-crystallisationmonomer 5V5;ZN;PEG;6h80 2762-3373
Assess
Dengue-RdRp3-inhibitor complex soakingmonomer 5V5;ZN;PEG;6h9r 2762-3373
Assess
DENGUE SEROTYPE 3 RNA-DEPENDENT RNA POLYMERASE BOUND TO COMPOUND 27monomer ZN;68T;5i3p 2762-3373
Assess
Dengue virus NS5 RNA dependent RNA polymerase domainmonomer ZN;MG;CL;PGE;2j7u 2763-3373
Assess
Dengue serotype 3 RNA-dependent RNA polymerase bound to NITD-640monomer ZN;V0J;6xd1 2763-3373
Assess
Dengue virus NS5 RNA dependent RNA polymerase domain complexed with 3' dGTPmonomer ZN;GTP;PEG;2j7w 2763-3373
Assess
Crystal structure of Dengue virus serotype 3 RNA dependent RNA polymerase bound to HeE1-2Tyr, a new…monomer ZN;6CJ;5iq6 2763-3373
Assess
DENGUE 3 NS5 METHYLTRANSFERASE BOUND TO S-ADENOSYL METHIONINE AND FRAGMENT NB3C2monomer SAM;X0V;5eiw 2497-2752
Assess