Q6YMS4 | SWISS-MODEL Repository

Q6YMS4 (POLG_DEN3S) Dengue virus type 3 (strain Sri Lanka/1266/2000) (DENV-3)

Genome polyprotein UniProtKB InterPro Interactive Modelling

It is possible new templates exist for this target since these models were created.

Available Structures

Protein prM 115-280; PRO_0000268090

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	8cxg.1.H	monomer	0.58	206-280		57.32
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Small envelope protein M 206-280; PRO_0000268092

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	8cxg.1.H	monomer	0.58	206-280		57.32
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Envelope protein E 281-773; PRO_0000268093

	Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
	8jn5.1.E	monomer	0.67	281-772		99.80
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Serine protease NS3 1474-2092; PRO_0000268098

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Crystal Structure of HLA-A*11:01-GTS3	5wjn PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer P04439; P61769;	1606-1615	100	1×K;
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D30 TCR in complex with HLA-A*11:01-GTS3	5wkh PDBe PDBe-KB PDBj PDBsum RCSB SMTL	Heteromer A0A087WSZ9; K7N5N2; P04439; P61769;	1606-1615	100
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Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
8gzr.1.B	monomer	0.74	1650-2092	1×CDP;	98.71
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2whx.1.A	monomer	0.74	1494-2092	1×MN;	79.38
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5yvu.1.A	monomer	0.74	1475-2092		79.13
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RNA-directed RNA polymerase NS5 2491-3390; PRO_0000268102

Description	PDB ID	Oligo-state	Range	Seq id (%)	Ligands
Dengue virus RNA dependent RNA polymerase with residues from the NS5 linker region	4c11 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	homo-2-mer	2758-3379	99.16	4×ZN;
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Dengue 3 NS5 protein with compound 27	5jjs PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	2496-3374	99.41	2×ZN; 4×PEG; 1×6L2; 1×MG; 9×EDO; 1×SAH;
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Dengue virus full length NS5 complexed with viral Cap 0-RNA and SAH	5dto PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	2496-3373	99.3	2×ZN; 1×SAH; 2×MG; 1×ACT; 1×M7G;
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Dengue 3 NS5 protein with compound 29	5jjr PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	2497-3373	99.41	2×ZN; 1×SAH; 1×68E; 6×EDO; 1×MG; 3×PEG;
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Dengue serotype 3 RNA-dependent RNA polymerase bound to compound 15	5hmy PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	2762-3379	99.32	2×ZN; 1×LNY;
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Dengue serotype 3 RNA-dependent RNA polymerase bound to compound 5	5hmw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	2762-3379	99.32	2×ZN; 2×LNW;
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Dengue serotype 3 RNA-dependent RNA polymerase bound to compound 10	5hmx PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	2762-3378	99.32	2×ZN; 2×LNX;
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Dengue serotype 3 RNA-dependent RNA polymerase	4hhj PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	2762-3373	99.32	2×ZN; 1×P6G; 3×PEG;
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DENGUE SEROTYPE 3 RNA-DEPENDENT RNA POLYMERASE BOUND TO COMPOUND 29	5i3q PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	2762-3373	99.32	2×ZN; 1×68E;
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Dengue serotype 3 RNA-dependent RNA polymerase bound to compound 23	5hmz PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	2762-3373	99.32	2×ZN; 1×LNZ;
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Dengue serotype 3 RNA-dependent RNA polymerase bound to PC-79-SH52	5f3z PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	2762-3373	99.32	2×ZN; 1×5V5;
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DENGUE SEROTYPE 3 RNA-DEPENDENT RNA POLYMERASE BOUND TO FD-83-KI26	5f41 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	2762-3373	99.32	2×ZN; 1×5V6;
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Dengue serotype 3 RNA-dependent RNA polymerase bound to NITD-434	6xd0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	2762-3373	99.32	2×ZN; 3×GOL; 2×PEG; 1×V0M;
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Dengue serotype 3 RNA-dependent RNA polymerase bound to compound 4	5hn0 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	2762-3373	99.32	2×ZN; 1×LNN;
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Dengue serotype 3 RNA-dependent RNA polymerase bound to JF-31-MG46	5f3t PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	2762-3373	99.32	2×ZN; 1×5UH;
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Dengue serotype 3 RNA-dependent RNA polymerase bound to NITD-107	3vws PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	2762-3373	99.32	2×ZN; 2×VWS; 1×PEG;
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Dengue-RdRp3-inhibitor complex co-crystallisation	6h80 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	2762-3373	99.28	1×5V5; 2×ZN; 5×PEG;
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Dengue-RdRp3-inhibitor complex soaking	6h9r PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	2762-3373	99.28	1×5V5; 2×ZN; 8×PEG;
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DENGUE SEROTYPE 3 RNA-DEPENDENT RNA POLYMERASE BOUND TO COMPOUND 27	5i3p PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	2762-3373	99.32	2×ZN; 1×68T;
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Dengue virus NS5 RNA dependent RNA polymerase domain	2j7u PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	2763-3373	99.48	2×ZN; 1×MG; 1×CL; 1×PGE;
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Dengue serotype 3 RNA-dependent RNA polymerase bound to NITD-640	6xd1 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	2763-3373	99.33	2×ZN; 1×V0J;
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Dengue virus NS5 RNA dependent RNA polymerase domain complexed with 3' dGTP	2j7w PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	2763-3373	99.47	2×ZN; 1×GTP; 1×PEG;
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Crystal structure of Dengue virus serotype 3 RNA dependent RNA polymerase bound to HeE1-2Tyr, a new…	5iq6 PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	2763-3373	99.31	2×ZN; 1×6CJ;
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DENGUE 3 NS5 METHYLTRANSFERASE BOUND TO S-ADENOSYL METHIONINE AND FRAGMENT NB3C2	5eiw PDBe PDBe-KB PDBj PDBsum RCSB SMTL	monomer	2497-2752	99.61	1×SAM; 1×X0V;
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Template	Oligo-state	QMEANDisCo	Range	Ligands	Trg-Tpl Seq id (%)
5zqk.1.A	monomer	0.77	2496-3373	2×ZN;	79.15
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8gzr.1.A	monomer	0.77	2496-3375	1×MN; 2×ZN; 1×SAH;	97.44
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5jjr.1.A	monomer	0.77	2497-3373	2×ZN; 1×SAH; 1×68E;	99.33
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	Model ID	Oligo-state	Avg pLDDT	Range	Trg-Mdl Seq Id (%)

	Model ID	Oligo-state	Avg Confidence	Range	Trg-Mdl Seq id (%)

Q6YMS4 (POLG_DEN3S) Dengue virus type 3 (strain Sri Lanka/1266/2000) (DENV-3)

Genome polyprotein UniProtKBInterProInteractive Modelling

Available Structures

Protein prM 115-280; PRO_0000268090

Small envelope protein M 206-280; PRO_0000268092

Envelope protein E 281-773; PRO_0000268093

Serine protease NS3 1474-2092; PRO_0000268098

RNA-directed RNA polymerase NS5 2491-3390; PRO_0000268102

Alignments

Background

Resolution

Genome polyprotein UniProtKB InterPro Interactive Modelling