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SMTL ID : 1dxt.1

HIGH-RESOLUTION X-RAY STUDY OF DEOXY RECOMBINANT HUMAN HEMOGLOBINS SYNTHESIZED FROM BETA-GLOBINS HAVING MUTATED AMINO TERMINI

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-2-2-mer

Ligands

4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1:	18 residues within 4Å: Chain A: Y.42, F.43, H.45, F.46, H.58, K.61, V.62, A.65, L.66, L.83, L.86, H.87, L.91, V.93, N.97, F.98, L.101, L.136 21 PLIP interactions: 21 interactions with chain A, Hydrophobic interactions: A:Y.42, A:F.43, A:F.43, A:F.43, A:V.62, A:A.65, A:L.66, A:L.83, A:L.83, A:L.86, A:L.91, A:V.93, A:V.93, A:F.98, A:F.98, A:L.136 Water bridges: A:H.45 Salt bridges: A:H.45, A:K.61 pi-Stacking: A:H.58 Metal complexes: A:H.87
HEM.2:	17 residues within 4Å: Chain B: L.32, F.42, F.43, H.64, K.67, V.68, A.71, L.89, L.92, H.93, L.97, V.99, N.103, F.104, L.107, V.138, L.142 20 PLIP interactions: 20 interactions with chain B, Hydrophobic interactions: B:L.32, B:F.42, B:F.42, B:F.43, B:F.43, B:F.43, B:K.67, B:V.68, B:L.89, B:L.92, B:L.97, B:V.99, B:N.103, B:F.104, B:L.107, B:V.138, B:L.142 Salt bridges: B:K.67 pi-Stacking: B:H.64 Metal complexes: B:H.93
HEM.3:	17 residues within 4Å: Chain C: M.32, Y.42, F.43, H.45, F.46, H.58, K.61, V.62, L.83, L.86, H.87, L.91, V.93, N.97, F.98, L.101, L.136 18 PLIP interactions: 18 interactions with chain C, Hydrophobic interactions: C:F.43, C:K.61, C:V.62, C:L.83, C:L.83, C:L.86, C:L.91, C:V.93, C:V.93, C:N.97, C:F.98, C:F.98, C:L.136 Salt bridges: C:H.45, C:K.61, C:K.61 pi-Stacking: C:H.58 Metal complexes: C:H.87
HEM.4:	16 residues within 4Å: Chain D: L.32, F.42, F.43, F.46, H.64, K.67, V.68, A.71, L.92, H.93, L.97, V.99, N.103, F.104, L.107, L.142 16 PLIP interactions: 16 interactions with chain D, Hydrophobic interactions: D:L.32, D:F.42, D:F.42, D:F.43, D:F.43, D:K.67, D:V.68, D:L.92, D:L.97, D:L.97, D:V.99, D:N.103, D:L.142 Salt bridges: D:K.67 pi-Stacking: D:H.64 Metal complexes: D:H.93

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Kavanaugh, J.S. et al., High-resolution X-ray study of deoxy recombinant human hemoglobins synthesized from beta-globins having mutated amino termini. Biochemistry (1992)

Release Date

1993-10-31

Peptides

HEMOGLOBIN (DEOXY) (ALPHA CHAIN): AC
HEMOGLOBIN (DEOXY) (BETA CHAIN): BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

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NGLPV2D

HEMOGLOBIN (DEOXY) (ALPHA CHAIN)

Toggle Identical (AC)

HEMOGLOBIN (DEOXY) (BETA CHAIN)

Toggle Identical (BD)

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