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SMTL ID : 1y5k.1

T-To-T(High) quaternary transitions in human hemoglobin: betaD99A deoxy low-salt (10 test sets)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-2-2-mer

Ligands

4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1:	15 residues within 4Å: Chain A: Y.42, F.43, H.45, F.46, H.58, K.61, L.83, L.86, H.87, L.91, V.93, N.97, F.98, L.101, L.136 18 PLIP interactions: 18 interactions with chain A, Hydrophobic interactions: A:F.43, A:F.43, A:F.46, A:L.83, A:L.83, A:L.86, A:L.91, A:V.93, A:V.93, A:N.97, A:F.98, A:L.101, A:L.136 Water bridges: A:H.58 Salt bridges: A:H.45, A:K.61 pi-Stacking: A:H.58 Metal complexes: A:H.87
HEM.2:	15 residues within 4Å: Chain B: L.31, F.41, H.63, K.66, V.67, A.70, L.88, L.91, H.92, L.96, V.98, N.102, F.103, L.106, L.141 16 PLIP interactions: 16 interactions with chain B, Hydrophobic interactions: B:L.31, B:F.41, B:K.66, B:V.67, B:A.70, B:L.88, B:L.91, B:L.96, B:V.98, B:F.103, B:L.106, B:L.141 Water bridges: B:K.66 Salt bridges: B:H.63 pi-Stacking: B:H.63 Metal complexes: B:H.92
HEM.3:	16 residues within 4Å: Chain C: M.32, Y.42, F.43, H.45, H.58, K.61, L.83, L.86, H.87, L.91, V.93, N.97, F.98, L.101, V.132, L.136 19 PLIP interactions: 19 interactions with chain C, Hydrophobic interactions: C:F.43, C:F.43, C:F.43, C:L.83, C:L.86, C:L.91, C:V.93, C:V.93, C:F.98, C:F.98, C:L.101, C:V.132, C:L.136 Water bridges: C:H.58 Salt bridges: C:H.45, C:K.90 pi-Stacking: C:H.58 pi-Cation interactions: C:H.58 Metal complexes: C:H.87
HEM.4:	14 residues within 4Å: Chain D: F.41, F.42, H.63, V.67, A.70, F.71, L.91, H.92, L.96, V.98, N.102, F.103, L.106, L.141 16 PLIP interactions: 16 interactions with chain D, Hydrophobic interactions: D:F.41, D:F.42, D:V.67, D:V.67, D:A.70, D:F.71, D:L.91, D:L.96, D:V.98, D:V.98, D:N.102, D:F.103, D:L.106, D:L.141 pi-Stacking: D:H.63 Metal complexes: D:H.92

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Kavanaugh, J.S. et al., Crystallographic evidence for a new ensemble of ligand-induced allosteric transitions in hemoglobin: the T-to-T(high) quaternary transitions. Biochemistry (2005)

Release Date

2004-12-14

Peptides

Hemoglobin alpha chain: AC
Hemoglobin beta chain: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

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NGLPV2D

Hemoglobin alpha chain

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Hemoglobin beta chain

Toggle Identical (BD)

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