- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- hetero-oligomer
- Ligands
- 6 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)(Covalent)
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
FES.4: 10 residues within 4Å:- Chain E: C.129, H.131, L.132, G.133, C.134, C.148, C.150, H.151, G.152, S.153
4 PLIP interactions:4 interactions with chain E,- Metal complexes: E:C.129, E:H.131, E:C.148, E:H.151
FES.10: 10 residues within 4Å:- Chain N: C.129, H.131, L.132, G.133, C.134, C.148, C.150, H.151, G.152, S.153
4 PLIP interactions:4 interactions with chain N,- Metal complexes: N:C.129, N:H.131, N:C.148, N:H.151
- 2 x SMA: STIGMATELLIN A(Non-covalent)
SMA.5: 21 residues within 4Å:- Chain C: T.122, I.125, A.126, F.129, M.139, G.143, V.146, I.147, F.151, L.165, I.269, V.270, P.271, E.272, L.275, F.278, Y.279, M.295, F.296
- Chain N: C.150, H.151
14 PLIP interactions:14 interactions with chain C- Hydrophobic interactions: C:I.125, C:F.129, C:V.146, C:I.147, C:I.147, C:F.151, C:L.165, C:P.271, C:L.275, C:L.275, C:F.278, C:Y.279
- Hydrogen bonds: C:E.272
- Water bridges: C:E.272
SMA.11: 21 residues within 4Å:- Chain E: C.150, H.151
- Chain L: T.122, I.125, A.126, F.129, M.139, G.143, V.146, I.147, F.151, L.165, I.269, V.270, P.271, E.272, L.275, F.278, Y.279, M.295, F.296
14 PLIP interactions:14 interactions with chain L- Hydrophobic interactions: L:I.125, L:F.129, L:V.146, L:I.147, L:I.147, L:F.151, L:L.165, L:P.271, L:L.275, L:L.275, L:F.278, L:Y.279
- Hydrogen bonds: L:E.272
- Water bridges: L:E.272
- 2 x UQ6: 5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL(Non-covalent)
UQ6.6: 15 residues within 4Å:- Chain C: Y.16, I.17, Q.22, S.34, L.40, I.44, F.49, M.52, V.194, L.198, L.201, S.206, M.221, D.229
- Ligands: HEM.2
10 PLIP interactions:10 interactions with chain C- Hydrophobic interactions: C:I.17, C:L.40, C:L.40, C:I.44, C:I.44, C:V.194, C:L.198
- Hydrogen bonds: C:Q.22, C:S.206
- Water bridges: C:S.20
UQ6.12: 15 residues within 4Å:- Chain L: Y.16, I.17, Q.22, S.34, L.40, I.44, F.49, M.52, V.194, L.198, L.201, S.206, M.221, D.229
- Ligands: HEM.8
10 PLIP interactions:10 interactions with chain L- Hydrophobic interactions: L:I.17, L:L.40, L:L.40, L:I.44, L:I.44, L:V.194, L:L.198
- Hydrogen bonds: L:Q.22, L:S.206
- Water bridges: L:S.20
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hunte, C. et al., Structure at 2.3 A resolution of the cytochrome bc(1) complex from the yeast Saccharomyces cerevisiae co-crystallized with an antibody Fv fragment. Structure Fold.Des. (2000)
- Release Date
- 2001-05-16
- Peptides
- UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I: AJ
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2: BK
CYTOCHROME B: CL
CYTOCHROME C1: DM
UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT: EN
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 17 KD PROTEIN: FO
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KD PROTEIN: GP
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX UBIQUINONE-BINDING PROTEIN QP-C: HQ
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.3 KD PROTEIN: IR
HEAVY CHAIN (VH) OF FV-FRAGMENT: S
LIGHT CHAIN (VL) OF FV-FRAGMENT: T - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AJ
AB
BK
BC
CL
CD
DM
DE
EN
EF
HO
HG
FP
FH
GQ
GI
IR
IS
XT
Y - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- hetero-oligomer
- Ligands
- 6 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)(Covalent)
- 2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- 2 x SMA: STIGMATELLIN A(Non-covalent)
- 2 x UQ6: 5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hunte, C. et al., Structure at 2.3 A resolution of the cytochrome bc(1) complex from the yeast Saccharomyces cerevisiae co-crystallized with an antibody Fv fragment. Structure Fold.Des. (2000)
- Release Date
- 2001-05-16
- Peptides
- UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN I: AJ
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX CORE PROTEIN 2: BK
CYTOCHROME B: CL
CYTOCHROME C1: DM
UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT: EN
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 17 KD PROTEIN: FO
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KD PROTEIN: GP
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX UBIQUINONE-BINDING PROTEIN QP-C: HQ
UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.3 KD PROTEIN: IR
HEAVY CHAIN (VH) OF FV-FRAGMENT: S
LIGHT CHAIN (VL) OF FV-FRAGMENT: T - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AJ
AB
BK
BC
CL
CD
DM
DE
EN
EF
HO
HG
FP
FH
GQ
GI
IR
IS
XT
Y - Membrane
-
We predict this structure to be a membrane protein.