SMTL ID : 6t15.1

The III2-IV(5B)1 respiratory supercomplex from S. cerevisiae

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-2-2-2-2-2-2-2-2-2-2-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
18 x PEF: DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE(Covalent)(Non-covalent)
4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
7 x CDL: CARDIOLIPIN(Covalent)(Non-covalent)
6 x PCF: 1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE(Non-covalent)(Covalent)
2 x HEC: HEME C(Covalent)
2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
1 x CU: COPPER (II) ION(Non-covalent)
2 x HEA: HEME-A(Covalent)
1 x MG: MAGNESIUM ION(Non-covalent)
1 x CUA: DINUCLEAR COPPER ION(Covalent)
1 x ZN: ZINC ION(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Hartley, A.M. et al., Rcf2 revealed in cryo-EM structures of hypoxic isoforms of mature mitochondrial III-IV supercomplexes. Proc.Natl.Acad.Sci.USA (2020)
Release Date
2020-04-22
Peptides
CYTOCHROME B-C1 COMPLEX SUBUNIT 1, MITOCHONDRIAL; SYNONYM: COMPLEX III SUBUNIT 1, CORE PROTEIN I, UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN 1: AK
CYTOCHROME B-C1 COMPLEX SUBUNIT 2, MITOCHONDRIAL; SYNONYM: COMPLEX III SUBUNIT 2, CORE PROTEIN II, UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN 2: BL
CYTOCHROME B-C1 COMPLEX SUBUNIT 2, MITOCHONDRIAL; SYNONYM: COMPLEX III SUBUNIT 2, CORE PROTEIN II, UBIQUINOL-CYTOCHROME-C COMPLEX CORE PROTEIN 2: CM
CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL; SYNONYM: COMPLEX III SUBUNIT 4, COMPLEX III SUBUNIT IV, CYTOCHROME B-C1 COMPLEX SUBUNIT 4, UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CYTOCHROME C1 SUBUNIT, CYTOCHROME C-1: DN
CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL; SYNONYM: COMPLEX III SUBUNIT 5, RIESKE IRON-SULFUR PROTEIN, RISP, UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT: EO
CYTOCHROME B-C1 COMPLEX SUBUNIT 6; SYNONYM: COMPLEX III SUBUNIT 6,COMPLEX III SUBUNIT VI,CYTOCHROME C1 NON-HEME 17 KDA PROTEIN,MITOCHONDRIAL HINGE PROTEIN,UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 17 KDA PROTEIN: FP
CYTOCHROME B-C1 COMPLEX SUBUNIT 7; SYNONYM: COMPLEX III SUBUNIT 7,COMPLEX III SUBUNIT VII,UBIQUINOL-CYTOCHROME C REDUCTASE C REDUCTASE COMPLEX 14 KDA PROTEIN: GQ
CYTOCHROME B-C1 COMPLEX SUBUNIT 8; SYNONYM: COMPLEX III SUBUNIT 8,COMPLEX III SUBUNIT VII,UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 11 KDA PROTEIN,UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX UBIQUINONE-BINDING PROTEIN QP-C: HR
CYTOCHROME B-C1 COMPLEX SUBUNIT 9; SYNONYM: COMPLEX III SUBUNIT 9, COMPLEX III SUBUNIT X, CYTOCHROME C1 NON-HEME 7.3 KDA PROTEIN, UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.3 KDA PROTEIN: IS
CYTOCHROME B-C1 COMPLEX SUBUNIT 10; SYNONYM: COMPLEX III SUBUNIT 10,COMPLEX III SUBUNIT XI, UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 8.5 KDA PROTEIN: JT
CYTOCHROME C OXIDASE SUBUNIT 1; SYNONYM: CYTOCHROME C OXIDASE POLYPEPTIDE I, COX1: U
CYTOCHROME C OXIDASE SUBUNIT 2; SYNONYM: CYTOCHROME C OXIDASE POLYPEPTIDE II, COX2: V
CYTOCHROME C OXIDASE SUBUNIT 3; SYNONYM: CYTOCHROME C OXIDASE POLYPEPTIDE III, COX3: W
CYTOCHROME C OXIDASE SUBUNIT 4, MITOCHONDRIAL; SYNONYM: CYTOCHROME C OXIDASE POLYPEPTIDE IV, COX4: X
CYTOCHROME C OXIDASE POLYPEPTIDE 5B, MITOCHONDRIAL; SYNONYM: CYTOCHROME C OXIDASE POLYPEPTIDE VB, COX5B: Y
CYTOCHROME C OXIDASE SUBUNIT 6, MITOCHONDRIAL; SYNONYM: CYTOCHROME C OXIDASE POLYPEPTIDE VI, COX6: Z
CYTOCHROME C OXIDASE SUBUNIT 7; SYNONYM: CYTOCHROME C OXIDASE POLYPEPTIDE VII, COX7: 0
Cytochrome c oxidase polypeptide VIII, mitochondrial: 1
CYTOCHROME C OXIDASE SUBUNIT 7A; SYNONYM: CYTOCHROME C OXIDASE POLYPEPTIDE VIIA, COX9: 2
Cytochrome c oxidase subunit 6B: 3
CYTOCHROME C OXIDASE SUBUNIT 6A, MITOCHONDRIAL; CYTOCHROME C OXIDASE POLYPEPTIDE VIA, COX13: 4
COX26; SYNONYM: Uncharacterized protein YDR119W-A: 5
RCF2; SYNONYM: Respiratory supercomplex factor 2: 6
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
K
L
B
B
L
M
C
C
M
N
D
D
N
O
E
E
O
P
F
F
P
Q
G
G
Q
R
H
H
R
S
I
I
S
T
J
J
T
U
U
a
V
b
W
c
X
d
Y
e
Z
f
0
g
1
h
2
i
3
j
4
k
5
l
6
m
Membrane
We predict this structure to be a membrane protein.

CYTOCHROME B-C1 COMPLEX SUBUNIT 1, MITOCHONDRIAL; SYNONYM: COMPLEX III SUBUNIT 1, CORE PROTEIN I, UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN 1

Toggle Identical (AK)

CYTOCHROME B-C1 COMPLEX SUBUNIT 2, MITOCHONDRIAL; SYNONYM: COMPLEX III SUBUNIT 2, CORE PROTEIN II, UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CORE PROTEIN 2

Toggle Identical (BL)

CYTOCHROME B-C1 COMPLEX SUBUNIT 2, MITOCHONDRIAL; SYNONYM: COMPLEX III SUBUNIT 2, CORE PROTEIN II, UBIQUINOL-CYTOCHROME-C COMPLEX CORE PROTEIN 2

Toggle Identical (CM)

CYTOCHROME C1, HEME PROTEIN, MITOCHONDRIAL; SYNONYM: COMPLEX III SUBUNIT 4, COMPLEX III SUBUNIT IV, CYTOCHROME B-C1 COMPLEX SUBUNIT 4, UBIQUINOL-CYTOCHROME-C REDUCTASE COMPLEX CYTOCHROME C1 SUBUNIT, CYTOCHROME C-1

Toggle Identical (DN)

CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL; SYNONYM: COMPLEX III SUBUNIT 5, RIESKE IRON-SULFUR PROTEIN, RISP, UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT

Toggle Identical (EO)

CYTOCHROME B-C1 COMPLEX SUBUNIT 6; SYNONYM: COMPLEX III SUBUNIT 6,COMPLEX III SUBUNIT VI,CYTOCHROME C1 NON-HEME 17 KDA PROTEIN,MITOCHONDRIAL HINGE PROTEIN,UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 17 KDA PROTEIN

Toggle Identical (FP)

CYTOCHROME B-C1 COMPLEX SUBUNIT 7; SYNONYM: COMPLEX III SUBUNIT 7,COMPLEX III SUBUNIT VII,UBIQUINOL-CYTOCHROME C REDUCTASE C REDUCTASE COMPLEX 14 KDA PROTEIN

Toggle Identical (GQ)

CYTOCHROME B-C1 COMPLEX SUBUNIT 8; SYNONYM: COMPLEX III SUBUNIT 8,COMPLEX III SUBUNIT VII,UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 11 KDA PROTEIN,UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX UBIQUINONE-BINDING PROTEIN QP-C

Toggle Identical (HR)

CYTOCHROME B-C1 COMPLEX SUBUNIT 9; SYNONYM: COMPLEX III SUBUNIT 9, COMPLEX III SUBUNIT X, CYTOCHROME C1 NON-HEME 7.3 KDA PROTEIN, UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.3 KDA PROTEIN

Toggle Identical (IS)

CYTOCHROME B-C1 COMPLEX SUBUNIT 10; SYNONYM: COMPLEX III SUBUNIT 10,COMPLEX III SUBUNIT XI, UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 8.5 KDA PROTEIN

Toggle Identical (JT)

CYTOCHROME C OXIDASE SUBUNIT 1; SYNONYM: CYTOCHROME C OXIDASE POLYPEPTIDE I, COX1

CYTOCHROME C OXIDASE SUBUNIT 2; SYNONYM: CYTOCHROME C OXIDASE POLYPEPTIDE II, COX2

CYTOCHROME C OXIDASE SUBUNIT 3; SYNONYM: CYTOCHROME C OXIDASE POLYPEPTIDE III, COX3

CYTOCHROME C OXIDASE SUBUNIT 4, MITOCHONDRIAL; SYNONYM: CYTOCHROME C OXIDASE POLYPEPTIDE IV, COX4

CYTOCHROME C OXIDASE POLYPEPTIDE 5B, MITOCHONDRIAL; SYNONYM: CYTOCHROME C OXIDASE POLYPEPTIDE VB, COX5B

CYTOCHROME C OXIDASE SUBUNIT 6, MITOCHONDRIAL; SYNONYM: CYTOCHROME C OXIDASE POLYPEPTIDE VI, COX6

CYTOCHROME C OXIDASE SUBUNIT 7; SYNONYM: CYTOCHROME C OXIDASE POLYPEPTIDE VII, COX7

Cytochrome c oxidase polypeptide VIII, mitochondrial

CYTOCHROME C OXIDASE SUBUNIT 7A; SYNONYM: CYTOCHROME C OXIDASE POLYPEPTIDE VIIA, COX9

Cytochrome c oxidase subunit 6B

CYTOCHROME C OXIDASE SUBUNIT 6A, MITOCHONDRIAL; CYTOCHROME C OXIDASE POLYPEPTIDE VIA, COX13

COX26; SYNONYM: Uncharacterized protein YDR119W-A

RCF2; SYNONYM: Respiratory supercomplex factor 2

Related Entries With Identical Sequence

1ezv.1 | 1kb9.1 | 1kyo.1 | 1p84.1 | 2ibz.1 | 3cx5.1 | 3cxh.1 | 4pd4.1 | 6giq.1 | 6hu9.1 | 6t0b.1 | 6ymx.1 | 6ymy.1