SMTL ID : 6t0b.1

The III2-IV(5B)2 respiratory supercomplex from S. cerevisiae

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer

Ligands

8 x CDL: CARDIOLIPIN(Non-covalent)

CDL.1: 13 residues within 4Å: Chain A: H.319, K.323, M.428, M.429, W.431 Chain C: R.4, I.17, I.18, H.222 Chain J: W.33 Ligands: PEF.2, PEF.6, PCF.18 8 PLIP interactions: 1 interactions with chain J, 4 interactions with chain A, 3 interactions with chain C Hydrophobic interactions: J:W.33, C:I.17 Hydrogen bonds: A:M.429, A:W.431 Salt bridges: A:H.319, A:K.323, C:R.4, C:H.222 CDL.5: 16 residues within 4Å: Chain C: N.27, Y.28, W.29, M.32, F.88, V.92, L.235, F.236 Chain G: H.85 Chain H: A.44, S.48, R.51, F.52, Q.55 Ligands: PCF.8, CDL.10 10 PLIP interactions: 1 interactions with chain G, 6 interactions with chain C, 3 interactions with chain H Salt bridges: G:H.85, H:R.51, H:R.51 Hydrophobic interactions: C:F.88, C:V.92, C:L.235, C:F.236 Hydrogen bonds: C:Y.28, C:W.29, H:Q.55 CDL.10: 19 residues within 4Å: Chain C: Y.28, V.231, L.235 Chain D: Y.220, L.221, I.224, K.227, K.228, K.235 Chain E: M.29 Chain G: H.85 Chain H: L.37, I.40, N.43, A.44, N.47, R.51 Ligands: CDL.5, CDL.15 15 PLIP interactions: 7 interactions with chain D, 6 interactions with chain H, 2 interactions with chain C Hydrophobic interactions: D:L.221, D:I.224, D:I.224, H:L.37, H:I.40, C:L.235 Salt bridges: D:K.227, D:K.228, D:K.228, D:K.235, H:R.51 Hydrogen bonds: H:N.47, H:R.51, H:R.51, C:Y.28 CDL.15: 14 residues within 4Å: Chain D: W.225 Chain E: K.14, K.21, Y.25, F.28 Chain H: P.36, L.37 Chain I: F.3, L.6, F.11 Chain Y: K.77, F.80 Ligands: CDL.10, PEF.14 9 PLIP interactions: 6 interactions with chain E, 1 interactions with chain H, 2 interactions with chain I Hydrophobic interactions: E:Y.25, E:F.28, E:F.28, E:F.28, I:L.6, I:F.11 Hydrogen bonds: E:Y.25, H:P.36 Salt bridges: E:K.14 CDL.20: 13 residues within 4Å: Chain K: H.319, K.323, D.425, M.428, M.429, W.431 Chain M: R.4, I.17, I.18, H.222 Chain T: W.33 Ligands: PEF.21, PCF.34 11 PLIP interactions: 5 interactions with chain M, 5 interactions with chain K, 1 interactions with chain T Hydrophobic interactions: M:I.17, M:I.18, T:W.33 Salt bridges: M:R.4, M:H.222, M:H.222, K:H.319, K:K.323 Hydrogen bonds: K:M.429, K:W.431, K:W.431 CDL.24: 13 residues within 4Å: Chain M: N.27, Y.28, W.29, M.32, L.35, F.88 Chain Q: H.85 Chain R: S.48, R.51, F.52, Q.55 Ligands: CDL.25, PCF.28 10 PLIP interactions: 4 interactions with chain R, 5 interactions with chain M, 1 interactions with chain Q Hydrogen bonds: R:R.51, R:Q.55, M:Y.28, M:W.29, M:W.29 Salt bridges: R:R.51, R:R.51, Q:H.85 Hydrophobic interactions: M:L.35, M:F.88 CDL.25: 20 residues within 4Å: Chain M: Y.28, V.231, L.235 Chain N: Y.220, L.221, I.224, W.225, K.227, K.228, K.235 Chain O: M.29 Chain Q: H.85 Chain R: L.37, I.40, N.43, A.44, N.47, S.48, R.51 Ligands: CDL.24 14 PLIP interactions: 9 interactions with chain N, 4 interactions with chain R, 1 interactions with chain M Hydrophobic interactions: N:L.221, N:I.224, N:I.224, N:W.225, R:I.40, M:L.235 Hydrogen bonds: N:Y.220, R:N.47, R:R.51 Salt bridges: N:K.227, N:K.228, N:K.228, N:K.235, R:R.51 CDL.32: 14 residues within 4Å: Chain N: W.225 Chain O: K.14, K.21, G.22, S.24, Y.25, F.28 Chain R: K.35, P.36, L.37, F.41 Chain S: F.3, L.6, F.11 10 PLIP interactions: 5 interactions with chain O, 2 interactions with chain S, 1 interactions with chain b, 2 interactions with chain R Hydrophobic interactions: O:F.28, O:F.28, S:L.6, S:F.11, R:F.41 Hydrogen bonds: O:Y.25, R:P.36 Salt bridges: O:K.14, O:K.21, b:K.77

26 x PEF: DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE(Non-covalent)

PEF.2: 9 residues within 4Å: Chain A: N.279, H.319, F.320, W.431 Chain C: A.2, F.3, V.13 Ligands: CDL.1, PEF.7 Ligand excluded by PLIP PEF.6: 14 residues within 4Å: Chain A: S.424, M.429 Chain C: S.34, G.37, M.221, H.222, S.223, I.226, F.227, L.230 Chain D: K.230 Chain E: S.37 Ligands: CDL.1, PCF.18 Ligand excluded by PLIP PEF.7: 13 residues within 4Å: Chain C: F.3, S.6, N.7, V.8, Y.9, L.10, V.13 Chain M: T.112, N.115, V.116, M.193, M.196 Ligands: PEF.2 Ligand excluded by PLIP PEF.12: 14 residues within 4Å: Chain C: V.41, I.42, N.74, L.81, M.237, A.241 Chain D: L.208, K.211, T.212 Chain E: G.40, A.41, S.43, T.44, T.47 Ligand excluded by PLIP PEF.13: 11 residues within 4Å: Chain 1: F.27 Chain E: E.15 Chain U: N.406, K.408, L.409, F.466, Y.470, K.487 Chain Y: F.74, I.85 Ligands: PEF.14 Ligand excluded by PLIP PEF.14: 10 residues within 4Å: Chain E: E.15 Chain H: K.35 Chain U: I.412, L.463 Chain Y: F.74, K.77, G.78, L.81 Ligands: PEF.13, CDL.15 Ligand excluded by PLIP PEF.16: 7 residues within 4Å: Chain C: L.321, F.324 Chain G: L.35 Chain H: K.53, S.54, L.57, Y.58 Ligand excluded by PLIP PEF.19: 11 residues within 4Å: Chain C: H.73 Chain E: E.46, I.49, T.53 Chain J: F.44, G.47, W.48, P.49 Chain M: D.160, I.161, W.164 Ligand excluded by PLIP PEF.21: 7 residues within 4Å: Chain K: H.319, W.431 Chain M: A.2, F.3, V.13, I.18 Ligands: CDL.20 Ligand excluded by PLIP PEF.26: 14 residues within 4Å: Chain K: S.424, S.427, M.429 Chain M: L.38, H.222, S.223, I.226, F.227, L.230, V.233, F.234 Chain N: K.230 Chain O: S.37 Ligands: PCF.34 Ligand excluded by PLIP PEF.27: 10 residues within 4Å: Chain C: T.112, N.115, V.116, I.119, M.193, M.196 Chain M: F.3, N.7, Y.9, V.13 Ligand excluded by PLIP PEF.30: 15 residues within 4Å: Chain M: V.41, I.42, N.74, M.237, F.245 Chain N: L.208, K.211, T.212, L.216 Chain O: G.40, A.41, S.43, T.44, T.47, F.48 Ligand excluded by PLIP PEF.33: 9 residues within 4Å: Chain M: L.321 Chain Q: N.34, L.35, K.40 Chain R: K.53, S.54, F.56, L.57, Y.58 Ligand excluded by PLIP PEF.40: 18 residues within 4Å: Chain U: F.95, P.96, R.97, I.98, L.160 Chain W: H.15, V.17, V.26, S.62, W.65, F.66, I.69, E.72, H.79, I.87, G.90, F.94 Ligands: PEF.44 Ligand excluded by PLIP PEF.42: 16 residues within 4Å: Chain 2: K.10, V.13, I.14, I.17, F.21 Chain U: F.268, F.321, L.324, A.325 Chain V: M.42, I.60, G.63, T.65, I.66, I.69, W.70 Ligand excluded by PLIP PEF.43: 13 residues within 4Å: Chain 2: W.31, F.35 Chain 5: L.51, P.54, G.55, Y.58 Chain U: T.354, F.426, H.429, F.430 Chain V: Y.6, C.8, M.29 Ligand excluded by PLIP PEF.44: 18 residues within 4Å: Chain W: F.66, I.69, A.73, T.74, I.87, F.91, F.94, M.218, M.222, V.225, R.229, H.234, T.236, H.239, H.240, V.241, G.242 Ligands: PEF.40 Ligand excluded by PLIP PEF.45: 18 residues within 4Å: Chain 4: T.105, L.106, F.107, W.108, N.113 Chain U: S.204, T.208, L.212, F.216 Chain W: Y.189, T.190, A.192, F.194, T.195, I.196, Y.206, A.207, G.210 Ligand excluded by PLIP PEF.47: 16 residues within 4Å: Chain 5: V.46 Chain U: L.334, L.339, I.342, F.346, F.414, W.415, F.418 Chain V: S.40, M.48 Chain Y: H.67, V.72, I.75, T.76, V.79, F.80 Ligand excluded by PLIP PEF.49: 11 residues within 4Å: Chain 5: A.56, V.57, F.60, S.61, K.62 Chain U: V.423, V.453, I.456 Chain V: Y.6 Chain Y: F.87 Ligands: PCF.48 Ligand excluded by PLIP PEF.55: 18 residues within 4Å: Chain 7: F.268, F.321, A.325 Chain 8: L.38, M.42, I.60, H.62, G.63, I.66, I.69, W.70, F.73 Chain c: E.6 Chain f: K.10, V.13, I.14, I.17, F.21 Ligand excluded by PLIP PEF.56: 12 residues within 4Å: Chain 7: V.423, Y.452, V.453, I.456 Chain 8: Y.6 Ligands: PCF.63 Chain i: W.53, A.56, V.57, F.60, S.61, K.62 Ligand excluded by PLIP PEF.57: 17 residues within 4Å: Chain 7: F.95, P.96, R.97, I.98, I.156, L.160 Chain 9: H.15, V.17, V.26, W.65, F.66, I.69, E.72, H.79, I.87, F.91, F.94 Ligand excluded by PLIP PEF.59: 15 residues within 4Å: Chain 7: H.429, F.430, I.433, W.450 Chain 8: P.5, Y.6, A.7, C.8, M.29 Chain f: W.31, F.35 Chain i: L.51, P.54, G.55, Y.58 Ligand excluded by PLIP PEF.60: 21 residues within 4Å: Chain 9: L.59, S.62, F.66, I.69, V.70, A.73, T.74, H.79, I.87, F.91, M.218, M.222, R.229, H.234, L.235, T.236, H.239, H.240, V.241, G.242, T.245 Ligand excluded by PLIP PEF.62: 15 residues within 4Å: Chain 7: L.339, I.342, F.346, F.414, W.415 Chain 8: S.40, V.47, M.48, K.52 Chain b: H.67, K.69, V.72, I.75, T.76, V.79 Ligand excluded by PLIP

4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.3: 19 residues within 4Å: Chain C: Q.43, I.44, G.47, I.48, M.50, V.65, R.79, H.82, A.83, A.86, T.127, A.128, G.131, Y.132, F.180, H.183, Y.184, P.187, Y.274 12 PLIP interactions: 12 interactions with chain C, Hydrophobic interactions: C:Q.43, C:I.48, C:V.65, C:A.83, C:T.127, C:F.180, C:Y.184 Hydrogen bonds: C:E.272 Salt bridges: C:R.79, C:R.79 Metal complexes: C:H.82, C:H.183 HEM.4: 22 residues within 4Å: Chain C: W.30, G.33, S.34, L.36, G.37, M.93, H.96, M.97, K.99, S.105, L.113, W.114, G.117, V.118, I.120, F.121, V.194, H.197, L.198, L.201, S.206, S.207 17 PLIP interactions: 17 interactions with chain C, Hydrophobic interactions: C:L.36, C:L.36, C:L.113, C:W.114, C:W.114, C:V.118, C:I.120, C:F.121, C:L.198, C:L.201 Hydrogen bonds: C:G.33, C:S.207 Salt bridges: C:H.96, C:K.99, C:K.99 Metal complexes: C:H.96, C:H.197 HEM.22: 21 residues within 4Å: Chain M: Q.43, I.44, G.47, I.48, M.50, V.65, R.79, H.82, A.83, A.86, T.127, A.128, G.131, Y.132, V.135, F.180, H.183, Y.184, P.187, E.272, Y.274 12 PLIP interactions: 12 interactions with chain M, Hydrophobic interactions: M:Q.43, M:I.44, M:I.48, M:V.65, M:A.83, M:F.180, M:Y.184, M:Y.184 Salt bridges: M:R.79, M:R.79 Metal complexes: M:H.82, M:H.183 HEM.23: 21 residues within 4Å: Chain M: W.30, G.33, S.34, L.36, G.37, M.93, H.96, M.97, K.99, S.105, L.113, W.114, G.117, V.118, I.120, V.194, H.197, L.198, L.201, S.206, S.207 18 PLIP interactions: 18 interactions with chain M, Hydrophobic interactions: M:L.36, M:L.36, M:L.113, M:W.114, M:W.114, M:V.118, M:I.120, M:L.198, M:L.201 Hydrogen bonds: M:G.33, M:S.206, M:S.206, M:S.207 Salt bridges: M:H.96, M:K.99, M:K.99 Metal complexes: M:H.96, M:H.197

7 x PCF: 1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE(Non-covalent)

PCF.8: 16 residues within 4Å: Chain C: W.29, F.94, M.97, A.98, Y.102, Y.103, T.317, K.323, F.326, F.327, F.329, V.330 Chain G: E.82 Chain H: Q.55, V.59 Ligands: CDL.5 13 PLIP interactions: 1 interactions with chain G, 11 interactions with chain C, 1 interactions with chain H Salt bridges: G:E.82, C:K.323 Hydrophobic interactions: C:W.29, C:W.29, C:F.94, C:A.98, C:Y.102, C:F.326, C:F.329 Hydrogen bonds: C:Y.102, C:Y.103, C:Y.103, H:Q.55 PCF.17: 11 residues within 4Å: Chain H: G.39, I.40, F.41, H.42, V.45, F.46 Chain Y: G.70, A.73, T.76, K.77, F.80 10 PLIP interactions: 6 interactions with chain H, 4 interactions with chain Y Hydrophobic interactions: H:F.41, H:F.41, H:F.41, Y:T.76, Y:K.77, Y:F.80 Hydrogen bonds: H:G.39, H:F.41, H:H.42 Salt bridges: Y:K.77 PCF.18: 14 residues within 4Å: Chain A: D.402, S.427, M.429 Chain E: Y.27, G.34, S.37, A.41 Chain I: F.11, K.12, N.14, V.18, I.21 Ligands: CDL.1, PEF.6 4 PLIP interactions: 1 interactions with chain I, 2 interactions with chain E, 1 interactions with chain A Hydrogen bonds: I:N.14 Hydrophobic interactions: E:A.41 pi-Cation interactions: E:Y.27 Salt bridges: A:D.402 PCF.28: 16 residues within 4Å: Chain M: W.29, F.94, M.97, A.98, Y.102, Y.103, T.317, F.327, F.329, F.331, F.333 Chain Q: L.41, E.82 Chain R: Q.55, V.59 Ligands: CDL.24 9 PLIP interactions: 7 interactions with chain M, 2 interactions with chain Q Hydrophobic interactions: M:W.29, M:F.94, M:Y.102, M:F.331, M:F.333 Hydrogen bonds: M:Y.103, M:Y.103, Q:E.82 Salt bridges: Q:E.82 PCF.34: 16 residues within 4Å: Chain K: D.402, S.427, M.429 Chain O: G.34, S.37, A.41 Chain S: Y.7, F.11, K.12, N.14, F.17, V.18, I.21 Chain T: F.44 Ligands: CDL.20, PEF.26 5 PLIP interactions: 2 interactions with chain S, 1 interactions with chain O, 1 interactions with chain K, 1 interactions with chain T Hydrophobic interactions: S:I.21, O:A.41, T:F.44 Hydrogen bonds: S:N.14 Salt bridges: K:D.402 PCF.48: 10 residues within 4Å: Chain U: Y.452, I.456 Chain Y: F.87, G.88, G.91, L.92, R.94, A.97, N.98 Ligands: PEF.49 7 PLIP interactions: 4 interactions with chain Y, 3 interactions with chain U Hydrophobic interactions: Y:F.87, Y:F.87, Y:L.92, U:I.456 Salt bridges: Y:R.94 Hydrogen bonds: U:Y.452, U:Y.452 PCF.63: 9 residues within 4Å: Chain 7: Y.452, I.456 Ligands: PEF.56 Chain b: F.87, G.88, G.91, R.94, L.95, A.97 3 PLIP interactions: 1 interactions with chain b, 2 interactions with chain 7 Salt bridges: b:R.94 Hydrophobic interactions: 7:I.456 Hydrogen bonds: 7:Y.452

2 x HEC: HEME C(Covalent)

HEC.9: 21 residues within 4Å: Chain D: V.39, C.40, C.43, H.44, N.108, L.112, P.113, P.114, L.116, I.119, R.123, Y.129, I.130, L.133, L.134, F.157, I.162, A.163, M.164, V.167, L.194 18 PLIP interactions: 18 interactions with chain D, Hydrophobic interactions: D:V.39, D:N.108, D:P.113, D:P.113, D:P.114, D:I.119, D:I.130, D:L.133, D:L.134, D:F.157, D:I.162, D:A.163, D:V.167, D:L.194 Hydrogen bonds: D:Y.129, D:A.163 Salt bridges: D:R.123 Metal complexes: D:H.44 HEC.29: 22 residues within 4Å: Chain N: V.39, C.40, C.43, H.44, N.108, A.111, L.112, P.113, P.114, L.116, I.119, R.123, Y.129, I.130, L.133, L.134, F.157, I.162, A.163, M.164, V.167, L.194 21 PLIP interactions: 21 interactions with chain N, Hydrophobic interactions: N:V.39, N:N.108, N:A.111, N:P.113, N:P.114, N:L.116, N:I.119, N:I.130, N:L.133, N:L.134, N:L.134, N:F.157, N:I.162, N:A.163, N:V.167, N:L.194 Hydrogen bonds: N:Y.129, N:Y.129, N:A.163 Salt bridges: N:R.123 Metal complexes: N:H.44

2 x FES: FE2/S2 (INORGANIC) CLUSTER(Covalent)(Non-covalent)

FES.11: 9 residues within 4Å: Chain E: C.129, H.131, L.132, G.133, C.134, C.148, C.150, H.151, S.153 3 PLIP interactions: 3 interactions with chain E, Metal complexes: E:C.129, E:H.151, E:H.151 FES.31: 6 residues within 4Å: Chain O: C.129, H.131, C.134, C.148, C.150, H.151 4 PLIP interactions: 4 interactions with chain O, Metal complexes: O:C.129, O:H.131, O:C.148, O:H.151

2 x CU: COPPER (II) ION(Non-covalent)

CU.35: 3 residues within 4Å: Chain U: H.241, H.290, H.291 3 PLIP interactions: 3 interactions with chain U Metal complexes: U:H.241, U:H.290, U:H.291 CU.50: 3 residues within 4Å: Chain 7: H.241, H.290, H.291 3 PLIP interactions: 3 interactions with chain 7 Metal complexes: 7:H.241, 7:H.290, 7:H.291

4 x HEA: HEME-A(Non-covalent)

HEA.36: 31 residues within 4Å: Chain U: F.19, I.23, G.26, S.33, R.37, V.59, H.62, A.63, M.66, I.67, L.70, V.71, G.126, W.127, Y.371, V.374, F.377, H.378, L.381, S.382, I.386, L.389, F.390, Y.393, F.425, M.428, R.438, R.439, A.461, L.465, F.468 33 PLIP interactions: 33 interactions with chain U, Hydrophobic interactions: U:I.23, U:V.59, U:A.63, U:I.67, U:L.70, U:V.71, U:Y.371, U:V.374, U:F.377, U:F.377, U:L.381, U:I.386, U:I.386, U:L.389, U:F.390, U:F.390, U:Y.393, U:A.461, U:L.465, U:L.465, U:F.468 Hydrogen bonds: U:R.37, U:W.127, U:R.439 Salt bridges: U:R.438, U:R.439 pi-Stacking: U:F.377, U:H.378, U:H.378, U:F.425 pi-Cation interactions: U:H.62 Metal complexes: U:H.62, U:H.378 HEA.37: 33 residues within 4Å: Chain U: W.127, W.237, V.244, Y.245, I.248, H.290, H.291, T.309, I.312, A.313, T.316, G.317, I.320, F.348, T.349, G.352, L.353, G.355, V.356, L.358, A.359, D.364, H.368, V.373, H.376, F.377, V.380, L.381, R.438 Chain V: I.35, P.74, I.77, L.78 26 PLIP interactions: 4 interactions with chain V, 22 interactions with chain U, Hydrophobic interactions: V:I.35, V:P.74, V:I.77, V:L.78, U:W.237, U:V.244, U:V.244, U:I.248, U:T.309, U:A.313, U:I.320, U:F.348, U:L.353, U:L.358, U:V.373, U:F.377, U:F.377, U:V.380, U:L.381 Hydrogen bonds: U:W.127, U:Y.245 Salt bridges: U:H.368, U:R.438 pi-Cation interactions: U:H.241, U:H.241 Metal complexes: U:H.376 HEA.51: 32 residues within 4Å: Chain 7: F.19, G.26, T.30, S.33, R.37, V.59, H.62, A.63, M.66, I.67, L.70, V.71, G.126, W.127, Y.371, V.374, F.377, H.378, L.381, S.382, I.386, L.389, F.390, Y.393, I.424, F.425, M.428, R.438, R.439, S.458, A.461, L.465 30 PLIP interactions: 30 interactions with chain 7, Hydrophobic interactions: 7:R.37, 7:V.59, 7:A.63, 7:M.66, 7:I.67, 7:L.70, 7:V.71, 7:V.374, 7:F.377, 7:F.377, 7:L.381, 7:I.386, 7:I.386, 7:L.389, 7:F.390, 7:F.390, 7:Y.393, 7:I.424, 7:L.465, 7:L.465 Hydrogen bonds: 7:R.37, 7:W.127, 7:R.439 Salt bridges: 7:R.438, 7:R.439 pi-Stacking: 7:F.377, 7:H.378, 7:F.425 Metal complexes: 7:H.62, 7:H.378 HEA.52: 31 residues within 4Å: Chain 7: W.127, W.237, V.244, Y.245, I.248, H.290, H.291, T.309, I.312, A.313, T.316, G.317, I.320, F.321, F.348, G.352, G.355, V.356, L.358, A.359, D.364, H.368, V.373, H.376, F.377, V.380, L.381, R.438 Chain 8: I.35, P.74, I.77 24 PLIP interactions: 21 interactions with chain 7, 3 interactions with chain 8, Hydrophobic interactions: 7:W.237, 7:V.244, 7:V.244, 7:I.248, 7:T.316, 7:I.320, 7:F.321, 7:F.348, 7:A.359, 7:F.377, 7:F.377, 7:V.380, 7:L.381, 8:I.35, 8:P.74, 8:I.77 Hydrogen bonds: 7:Y.245, 7:Y.245, 7:H.291, 7:T.309 Salt bridges: 7:H.368, 7:R.438 pi-Cation interactions: 7:H.241 Metal complexes: 7:H.376

2 x CA: CALCIUM ION(Non-covalent)

CA.38: 5 residues within 4Å: Chain U: E.39, A.42, G.44, P.441, D.442 3 PLIP interactions: 3 interactions with chain U Metal complexes: U:E.39, U:A.42, U:G.44 CA.53: 6 residues within 4Å: Chain 7: E.39, A.42, P.43, G.44, Q.46, P.441 3 PLIP interactions: 3 interactions with chain 7 Metal complexes: 7:E.39, 7:A.42, 7:G.44

2 x MG: MAGNESIUM ION(Non-covalent)

MG.39: 3 residues within 4Å: Chain U: H.368, D.369 Chain V: E.208 3 PLIP interactions: 2 interactions with chain U, 1 interactions with chain V Metal complexes: U:H.368, U:D.369, V:E.208 MG.54: 4 residues within 4Å: Chain 7: H.368, D.369 Chain 8: D.172, E.208 4 PLIP interactions: 3 interactions with chain 7, 1 interactions with chain 8 Metal complexes: 7:H.368, 7:D.369, 7:D.369, 8:E.208

2 x CUA: DINUCLEAR COPPER ION(Non-covalent)

CUA.41: 6 residues within 4Å: Chain V: H.171, C.206, E.208, C.210, H.214, M.217 7 PLIP interactions: 7 interactions with chain V Metal complexes: V:H.171, V:C.206, V:C.206, V:E.208, V:C.210, V:C.210, V:H.214 CUA.58: 6 residues within 4Å: Chain 8: H.171, C.206, E.208, C.210, H.214, M.217 7 PLIP interactions: 7 interactions with chain 8 Metal complexes: 8:H.171, 8:C.206, 8:C.206, 8:E.208, 8:C.210, 8:C.210, 8:H.214

2 x ZN: ZINC ION(Non-covalent)

ZN.46: 4 residues within 4Å: Chain X: C.86, H.94, C.109, C.112 4 PLIP interactions: 4 interactions with chain X Metal complexes: X:C.86, X:H.94, X:C.109, X:C.112 ZN.61: 4 residues within 4Å: Chain a: C.86, H.94, C.109, C.112 4 PLIP interactions: 4 interactions with chain a Metal complexes: a:C.86, a:H.94, a:C.109, a:C.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hartley, A.M. et al., Rcf2 revealed in cryo-EM structures of hypoxic isoforms of mature mitochondrial III-IV supercomplexes. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-04-22

Peptides

Cytochrome b-c1 complex subunit 1, mitochondrial: AK
Cytochrome b-c1 complex subunit 2, mitochondrial: BL
Cytochrome b: CM
Cytochrome c1, heme protein, mitochondrial: DN
Cytochrome b-c1 complex subunit Rieske, mitochondrial: EO
Cytochrome b-c1 complex subunit 6: FP
Cytochrome b-c1 complex subunit 7: GQ
Cytochrome b-c1 complex subunit 8: HR
Cytochrome b-c1 complex subunit 9: IS
Cytochrome b-c1 complex subunit 10: JT
Cytochrome c oxidase subunit 1: U7
Cytochrome c oxidase subunit 2: V8
Cytochrome c oxidase subunit 3: W9
Cytochrome c oxidase subunit 4, mitochondrial: Xa
Cytochrome c oxidase polypeptide 5B, mitochondrial: Yb
Cytochrome c oxidase subunit 6, mitochondrial: Zc
Cytochrome c oxidase subunit 7: 0d
Cytochrome c oxidase polypeptide VIII, mitochondrial: 1e
Cytochrome c oxidase subunit 7A: 2f
Cytochrome c oxidase subunit 6B: 3g
Cytochrome c oxidase subunit 6A, mitochondrial: 4h
Cox26: 5i
Respiratory supercomplex factor 2, mitochondrial: 6j

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

K
L

B
B

L
M

C
C

M
N

D
D

N
O

E
E

O
P

F
F

P
Q

G
G

Q
R

H
H

R
S

I
I

S
T

J
J

T
U

U
a

7
n

V
b

8
o

W
c

9
p

X
d

a
q

Y
e

b
r

Z
f

c
s

0
g

d
t

1
h

e
u

2
i

f
v

3
j

g
w

4
k

h
x

5
l

i
y

6
m

j
z

Membrane

We predict this structure to be a membrane protein.
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Cytochrome b-c1 complex subunit 1, mitochondrial

Cytochrome b-c1 complex subunit 2, mitochondrial

Cytochrome b

Cytochrome c1, heme protein, mitochondrial

Cytochrome b-c1 complex subunit Rieske, mitochondrial

Cytochrome b-c1 complex subunit 6

Cytochrome b-c1 complex subunit 7

Cytochrome b-c1 complex subunit 8

Cytochrome b-c1 complex subunit 9

Cytochrome b-c1 complex subunit 10

Cytochrome c oxidase subunit 1

Cytochrome c oxidase subunit 2

Cytochrome c oxidase subunit 3

Cytochrome c oxidase subunit 4, mitochondrial

Cytochrome c oxidase polypeptide 5B, mitochondrial

Cytochrome c oxidase subunit 6, mitochondrial

Cytochrome c oxidase subunit 7

Cytochrome c oxidase polypeptide VIII, mitochondrial

Cytochrome c oxidase subunit 7A

Cytochrome c oxidase subunit 6B

Cytochrome c oxidase subunit 6A, mitochondrial

Cox26

Respiratory supercomplex factor 2, mitochondrial

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