SMTL ID : 6ymx.1

CIII2/CIV respiratory supercomplex from Saccharomyces cerevisiae

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-2-2-2-2-2-1-2-2-1-1-1-1-1-mer
Ligands
1 x CU: COPPER (II) ION(Non-covalent)
2 x HEA: HEME-A(Non-covalent)
7 x PTY: PHOSPHATIDYLETHANOLAMINE(Non-covalent)(Covalent)
2 x CN3: (2R,5S,11R,14R)-5,8,11-trihydroxy-2-(nonanoyloxy)-5,11-dioxido-16-oxo-14-[(propanoyloxy)methyl]-4,6,10,12,15-pentaoxa-5,11-diphosphanonadec-1-yl undecanoate(Non-covalent)
1 x CUA: DINUCLEAR COPPER ION(Non-covalent)
5 x PCF: 1,2-DIACYL-SN-GLYCERO-3-PHOSHOCHOLINE(Non-covalent)
1 x ZN: ZINC ION(Non-covalent)
2 x 6PH: (1R)-2-(phosphonooxy)-1-[(tridecanoyloxy)methyl]ethyl pentadecanoate(Non-covalent)
6 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
2 x 8PE: (2R)-3-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-(tetradecanoyloxy)propyl octadecanoate(Non-covalent)
1 x CN5: (5S,11R)-5,8,11-trihydroxy-5,11-dioxido-17-oxo-4,6,10,12,16-pentaoxa-5,11-diphosphaoctadec-1-yl pentadecanoate(Non-covalent)
2 x UQ6: 5-(3,7,11,15,19,23-HEXAMETHYL-TETRACOSA-2,6,10,14,18,22-HEXAENYL)-2,3-DIMETHOXY-6-METHYL-BENZENE-1,4-DIOL(Non-covalent)
2 x 9PE: (1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate(Non-covalent)
2 x 7PH: (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate(Non-covalent)
2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Berndtsson, J. et al., Respiratory supercomplexes enhance electron transport by decreasing cytochrome c diffusion distance. Embo Rep. (2020)
Release Date
2020-09-09
Peptides
Cytochrome c oxidase subunit 1: A
Cytochrome c oxidase subunit 2: B
Cytochrome c oxidase subunit 3: C
Cytochrome c oxidase subunit 4, mitochondrial: D
Cytochrome c oxidase subunit 5A, mitochondrial: E
Cytochrome c oxidase subunit 6, mitochondrial: F
Cytochrome c oxidase subunit 7, mitochondrial: G
Cytochrome c oxidase subunit 8, mitochondrial: H
Cytochrome c oxidase subunit 9, mitochondrial: I
Cytochrome c oxidase subunit 12, mitochondrial: J
Cytochrome c oxidase subunit 13, mitochondrial: K
Cytochrome c oxidase subunit 26, mitochondrial: L
Cytochrome b-c1 complex subunit 1, mitochondrial: MV
Cytochrome b-c1 complex subunit 2, mitochondrial: NW
Cytochrome b: OX
Cytochrome c1, heme protein, mitochondrial: PY
Cytochrome b-c1 complex subunit Rieske, mitochondrial: QZ
Cytochrome b-c1 complex subunit 6, mitochondrial: R
Cytochrome b-c1 complex subunit 7, mitochondrial: S1
Cytochrome b-c1 complex subunit 8, mitochondrial: T2
Cytochrome b-c1 complex subunit 9, mitochondrial: U
Cytochrome b-c1 complex subunit 6, mitochondrial: 0
Cytochrome b-c1 complex subunit 9, mitochondrial: 3
Cytochrome b-c1 complex subunit 10, mitochondrial: 4
Cytochrome b-c1 complex subunit 10, mitochondrial: 5
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
a
B
b
C
c
D
d
E
e
F
f
G
g
H
h
I
i
J
j
K
k
L
m
M
A
V
L
N
B
W
M
O
C
X
N
P
D
Y
O
Q
E
Z
P
R
F
S
G
1
R
T
H
2
S
U
I
0
Q
3
T
4
U
5
V
Membrane
We predict this structure to be a membrane protein.

Cytochrome c oxidase subunit 1

Cytochrome c oxidase subunit 2

Cytochrome c oxidase subunit 3

Cytochrome c oxidase subunit 4, mitochondrial

Cytochrome c oxidase subunit 5A, mitochondrial

Cytochrome c oxidase subunit 6, mitochondrial

Cytochrome c oxidase subunit 7, mitochondrial

Cytochrome c oxidase subunit 8, mitochondrial

Cytochrome c oxidase subunit 9, mitochondrial

Cytochrome c oxidase subunit 12, mitochondrial

Cytochrome c oxidase subunit 13, mitochondrial

Cytochrome c oxidase subunit 26, mitochondrial

Cytochrome b-c1 complex subunit 1, mitochondrial

Toggle Identical (MV)

Cytochrome b-c1 complex subunit 2, mitochondrial

Toggle Identical (NW)

Cytochrome b

Toggle Identical (OX)

Cytochrome c1, heme protein, mitochondrial

Toggle Identical (PY)

Cytochrome b-c1 complex subunit Rieske, mitochondrial

Toggle Identical (QZ)

Cytochrome b-c1 complex subunit 6, mitochondrial

Cytochrome b-c1 complex subunit 7, mitochondrial

Toggle Identical (S1)

Cytochrome b-c1 complex subunit 8, mitochondrial

Toggle Identical (T2)

Cytochrome b-c1 complex subunit 9, mitochondrial

Cytochrome b-c1 complex subunit 6, mitochondrial

Cytochrome b-c1 complex subunit 9, mitochondrial

Cytochrome b-c1 complex subunit 10, mitochondrial

Cytochrome b-c1 complex subunit 10, mitochondrial

Related Entries With Identical Sequence

1ezv.1 | 1kb9.1 | 1kyo.1 | 1p84.1 | 2ibz.1 | 3cx5.1 | 3cxh.1 | 4pd4.1 | 6giq.1 | 6hu9.1 | 6t0b.1 | 6t15.1 | 6ymy.1