SMTL ID : 1f3e.1

A NEW TARGET FOR SHIGELLOSIS: RATIONAL DESIGN AND CRYSTALLOGRAPHIC STUDIES OF INHIBITORS OF TRNA-GUANINE TRANSGLYCOSYLASE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.318, C.320, C.323, H.349 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.318, A:C.320, A:C.323, A:H.349 ZN.3: 4 residues within 4Å: Chain B: C.318, C.320, C.323, H.349 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.318, B:C.320, B:C.323, B:H.349

2 x DPZ: 3,5-DIAMINOPHTHALHYDRAZIDE(Non-covalent)

DPZ.2: 8 residues within 4Å: Chain A: Y.106, D.156, C.158, Q.203, G.229, G.230, L.231, M.260 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.106, A:M.260 Hydrogen bonds: A:Q.203, A:G.230, A:L.231 Water bridges: A:S.103, A:Y.106, A:D.156, A:M.260, A:D.280 pi-Stacking: A:Y.106 DPZ.4: 8 residues within 4Å: Chain B: Y.106, D.156, C.158, Q.203, G.229, G.230, L.231, M.260 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:Y.106, B:M.260 Hydrogen bonds: B:Q.203, B:G.230, B:L.231 Water bridges: B:D.102, B:S.103, B:Y.106, B:D.156, B:M.260, B:D.280 pi-Stacking: B:Y.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gradler, U. et al., A new target for shigellosis: rational design and crystallographic studies of inhibitors of tRNA-guanine transglycosylase. J.Mol.Biol. (2001)

Release Date

2000-06-15

Peptides

QUEUINE TRNA-RIBOSYLTRANSFERASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

QUEUINE TRNA-RIBOSYLTRANSFERASE

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