SMTL ID : 4pun.1

tRNA-Guanine Transglycosylase (TGT) Apo-Structure pH 7.8

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.318, C.320, C.323, H.349 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.318, A:C.320, A:C.323, A:H.349 ZN.3: 4 residues within 4Å: Chain B: C.318, C.320, C.323, H.349 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.318, B:C.320, B:C.323, B:H.349

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 6 residues within 4Å: Chain A: P.56, E.57, G.94, W.95, D.96, R.97 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.96 Salt bridges: A:D.96 DMS.4: 6 residues within 4Å: Chain B: P.56, E.57, G.94, W.95, D.96, R.97 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.96 Salt bridges: B:D.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Neeb, M. et al., Chasing Protons: How Isothermal Titration Calorimetry, Mutagenesis, and pKa Calculations Trace the Locus of Charge in Ligand Binding to a tRNA-Binding Enzyme. J.Med.Chem. (2014)

Release Date

2014-07-16

Peptides

Queuine tRNA-ribosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Queuine tRNA-ribosyltransferase

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