- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.31 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 14 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 7 residues within 4Å:- Chain A: P.56, E.57, G.94, W.95, D.96, R.97
- Chain B: K.325
7 PLIP interactions:5 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:G.94, A:D.96, A:R.97
- Water bridges: A:E.57, A:E.57, B:K.325, B:K.325
GOL.3: 4 residues within 4Å:- Chain A: F.16, S.17, I.18, D.254
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:I.18, A:I.18, A:D.254
- Water bridges: A:R.21, A:R.21
GOL.4: 6 residues within 4Å:- Chain A: A.61, T.62, C.320, A.321, E.348, A.352
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:A.321, A:E.348, A:E.348
- Water bridges: A:A.61, A:T.62, A:T.62, A:H.319, A:Q.356
GOL.5: 6 residues within 4Å:- Chain A: L.311, P.313, C.323, Q.324, W.326, S.327
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:C.323
- Water bridges: A:S.327
GOL.6: 6 residues within 4Å:- Chain A: R.11, M.32, K.33, R.34, G.35, V.36
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.11, A:R.11, A:M.32
- Water bridges: A:V.36
GOL.7: 7 residues within 4Å:- Chain A: W.296, E.317, K.360, F.373, D.376, F.377, R.380
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.317, A:D.376
- Water bridges: A:E.317
GOL.8: 3 residues within 4Å:- Chain A: R.38, R.60, G.63
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.38, A:R.38, A:R.60
- Water bridges: A:R.60, A:Q.359
GOL.11: 7 residues within 4Å:- Chain A: K.325
- Chain B: P.56, E.57, G.94, W.95, D.96, R.97
7 PLIP interactions:4 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:G.94, B:D.96, B:R.97
- Water bridges: B:E.57, A:K.325, A:K.325, A:K.325
GOL.12: 4 residues within 4Å:- Chain B: F.16, S.17, I.18, D.254
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:I.18, B:I.18, B:D.254
- Water bridges: B:R.21, B:R.21
GOL.13: 6 residues within 4Å:- Chain B: A.61, T.62, C.320, A.321, E.348, A.352
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:A.321, B:E.348
- Water bridges: B:A.61, B:T.62, B:T.62, B:H.319, B:Q.356
GOL.14: 6 residues within 4Å:- Chain B: L.311, P.313, C.323, Q.324, W.326, S.327
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:C.323
- Water bridges: B:S.327
GOL.15: 6 residues within 4Å:- Chain B: R.11, M.32, K.33, R.34, G.35, V.36
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.11, B:M.32
- Water bridges: B:V.36
GOL.16: 7 residues within 4Å:- Chain B: W.296, E.317, K.360, F.373, D.376, F.377, R.380
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:E.317, B:D.376
- Water bridges: B:K.360
GOL.17: 3 residues within 4Å:- Chain B: R.38, R.60, G.63
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.38, B:R.38, B:R.60
- Water bridges: B:R.60, B:Q.359
- 2 x 2YW: methyl 4-{2-[(6-amino-8-oxo-7,8-dihydro-1H-imidazo[4,5-g]quinazolin-2-yl)amino]ethyl}benzoate(Non-covalent)
2YW.9: 15 residues within 4Å:- Chain A: D.102, S.103, Y.106, D.156, C.158, I.201, Q.203, G.229, G.230, L.231, A.232, V.233, G.234, M.260, G.261
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:S.103, A:Q.203, A:G.230, A:L.231, A:A.232
- Salt bridges: A:D.102, A:D.156
- pi-Stacking: A:Y.106, A:Y.106
2YW.18: 15 residues within 4Å:- Chain B: D.102, S.103, Y.106, D.156, C.158, I.201, Q.203, G.229, G.230, L.231, A.232, V.233, G.234, M.260, G.261
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:S.103, B:Q.203, B:G.230, B:L.231, B:A.232
- Salt bridges: B:D.102, B:D.156
- pi-Stacking: B:Y.106, B:Y.106
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Neeb, M. et al., Addressing a New Subpocket of TGT by Elongated 2-Amino-lin-benzoguanines. To be Published
- Release Date
- 2015-05-20
- Peptides
- Queuine tRNA-ribosyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
SMTL ID : 4q8u.1
tRNA-Guanine Transglycosylase (TGT) in Complex with Methyl 4-[2-({6-amino-8-oxo-1H,7H,8H-imidazo[4,5-g]quinazolin-2-yl}amino)ethyl]benzoate
Queuine tRNA-ribosyltransferase
Toggle Identical (AB)Related Entries With Identical Sequence
1enu.1 | 1f3e.1 | 1k4g.1 | 1k4h.1 | 1n2v.1 | 1p0b.1 | 1p0d.1 | 1p0e.1 | 1pud.1 | 1pud.2 | 1q2r.1 | 1q2r.2 | 1q2r.3 | 1q2r.4 | 1q2s.1 | 1q2s.2 | 1q2s.3 | 1q2s.4 | 1q4w.1 | 1q63.1 | 1q65.1 | 1q66.1 | 1r5y.1 | 1s38.1 | 1s39.1 | 2bbf.1 | 2pwu.1 | 2qii.1 | 2z7k.1 | 3c2y.1 more...less...3eos.1 | 3eou.1 | 3gc4.1 | 3gc5.1 | 3ge7.1 | 3rr4.1 | 3s1g.1 | 3sm0.1 | 3tll.1 | 4fps.1 | 4fr1.1 | 4fr6.1 | 4fsa.1 | 4gg9.1 | 4gh1.1 | 4gh3.1 | 4gi4.1 | 4giy.1 | 4gkt.1 | 4puj.1 | 4puk.1 | 4pun.1 | 4q4m.1 | 4q4o.1 | 4q4p.1 | 4q4q.1 | 4q4r.1 | 4q4s.1 | 4q8t.1 | 5egr.1 | 5i03.1 | 5i06.1 | 5i07.1 | 5i09.1 | 5j9m.1 | 5j9n.1 | 5j9o.1 | 5jgm.1 | 5jgo.1 | 5jsv.1 | 5jsw.1 | 5jt5.1 | 5jt6.1 | 5jt7.1 | 5jxq.1 | 5lpp.1 | 5lpq.1 | 5lps.1 | 5lpt.1 | 6fmn.1 | 6fpu.1