SMTL ID : 5i09.1

tRNA guanine transglycosylase (TGT) in soaked complex with Furanoside-Based lin-Benzoguanine 3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.44 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.318, C.320, C.323, H.349 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.318, A:C.320, A:C.323, A:H.349 ZN.6: 4 residues within 4Å: Chain B: C.318, C.320, C.323, H.349 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.318, B:C.320, B:C.323, B:H.349

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: P.56, E.57, G.94, W.95, D.96, R.97 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:P.56, A:G.94, A:D.96, A:R.97 Water bridges: A:E.57, A:R.97 GOL.3: 5 residues within 4Å: Chain A: H.145, G.148, S.149, E.191, Q.192 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.145, A:G.148 Water bridges: A:Q.192 GOL.4: 7 residues within 4Å: Chain A: W.296, E.317, K.360, F.373, D.376, F.377, R.380 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.317, A:K.360, A:D.376, A:R.380 Water bridges: A:E.317 GOL.7: 6 residues within 4Å: Chain B: P.56, E.57, G.94, W.95, D.96, R.97 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:P.56, B:G.94, B:D.96, B:R.97 Water bridges: B:E.57, B:R.97 GOL.8: 5 residues within 4Å: Chain B: H.145, G.148, S.149, E.191, Q.192 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.145, B:G.148 Water bridges: B:Q.192 GOL.9: 7 residues within 4Å: Chain B: W.296, E.317, K.360, F.373, D.376, F.377, R.380 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.317, B:K.360, B:D.376, B:R.380 Water bridges: B:K.360

2 x 1UD: methyl 6-[6-amino-2-(methylamino)-8-oxo-7,8-dihydro-1H-imidazo[4,5-g]quinazolin-4-yl]-5,6-dideoxy-3-O-methyl-beta-D-ribo-hexofuranoside(Non-covalent)

1UD.5: 16 residues within 4Å: Chain A: D.102, S.103, Y.106, D.156, C.158, I.201, Q.203, G.229, G.230, L.231, A.232, V.233, Y.258, M.260, G.261, D.280 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.106, A:M.260 Hydrogen bonds: A:S.103, A:Q.203, A:G.230, A:L.231, A:A.232, A:Y.258 Water bridges: A:Y.106, A:D.156, A:C.158 Salt bridges: A:D.102, A:D.156 pi-Stacking: A:Y.106, A:Y.106 1UD.10: 16 residues within 4Å: Chain B: D.102, S.103, Y.106, D.156, C.158, I.201, Q.203, G.229, G.230, L.231, A.232, V.233, Y.258, M.260, G.261, D.280 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:Y.106, B:M.260 Hydrogen bonds: B:D.102, B:S.103, B:Y.106, B:Q.203, B:G.230, B:L.231, B:A.232, B:Y.258, B:Y.258 Water bridges: B:Y.106, B:D.156, B:C.158 Salt bridges: B:D.102, B:D.156 pi-Stacking: B:Y.106, B:Y.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ehrmann, F.R. et al., Co-crystallization, Isothermal titration calorimetry and nanoESI-MS reveal dimer disturbing inhibitors. To be Published

Release Date

2017-02-15

Peptides

Queuine tRNA-ribosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Queuine tRNA-ribosyltransferase

Related Entries With Identical Sequence